Protein

View in Explore
Genbank accession
YP_010655229.1 [GenBank]
Protein name
putative tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,81
Protein sequence
MAYLIIQNTQLKGFKDSITQVDNQSIIKVLMQYFPDGFDPTKSKLLLNNNEVDFVGGDLTYTLKDDDKLFVVHEVKADPLTLIVIAVAVVAAAVSIALIPKPAIPNQSGENQDSSNNMFAGQSNIARTYQAFPFILGKIRSYPDLIGEPIYSYENNEQLIKQYFSVGFGEIDIRDIRIGESLIGGFEGSTTNIYQPSSNVTTINDYVVGYSSSEIEGQILKKTNGGENIVSYNLSITGNLSLVSTSLTEFYIAKDTGGNDLKADFDAFAGSFLMKIAYTYMNTENEPNVSIGSGVVSSIDDLGSSYRIVFNAFSGDSTSNVMSINAASQSQPGGIGSVPMSNEVEELWFNFTFPRGLKSDVDIEIVVDQLDQQNGSPTGFTYIHNVTYTDATLTPQYITLKLNSELNGLGWYRYSIKRTNDESGNSSNPDEIRIERVQGIVNYAVRSFGDITLMEVNLTSSGGVPTSNNTKINCTATAMAPTKDDLTTRTSRKFADAILHMYLNYYKLPIDQLNIDDLYDIQDRLDAENPELAYFDFSFDDASVDLQQRMETICNAARVSTFLTNGQWQFVRDEKRDFPAGLITGRDIAGENRDYSITGGGSNSSDYDGVRVEYIDPVSNTKKYIRKKVSNGAFVDGESFNPKIMELAGCRNETQARNRAELEVRKLTYEVETLTETVLPSGSIFDKGDLLLYAEQYETTITDGEILAVNGQTITTSELLKFEAGKNYKMYLTGIDGTVYGPRTINPYALSGSYRCAIDDPSNIFTRDSVIGYNVQTGSRYIIVSDSDFGQTKWILTEKTASGKLTQLTMVNYDERVYDYD
Physico‐chemical
properties
protein length:821 AA
molecular weight: 90951,25710 Da
isoelectric point:4,52088
aromaticity:0,10110
hydropathy:-0,30938

Domains

Domains [InterPro]
DC_0118
STR
6–664
DC_0118 DC_0808
NF040662
Unmapped
342–819
NF040662
Coil
Unmapped
657–677
Coil
YP_010655229.1
1 821
Architecture
STR
RBD
STR 6-664 | RBD 690-821
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010655229.1
1 821
Domain Start End Length (AA) Confidence
N-terminal 1 234 234 0,9642
Central domain 235 433 200 0,3637
C-terminal 434 821 387 0,1067
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-234
Central
235-433
C-terminal
434-821

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage vB_PspS-H40/1
[NCBI] 		1856120 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010655229.1 [NCBI]
Genbank nucleotide accession
NC_070823 [NCBI]
CDS location
range 925 -> 3390
strand +
CDS
ATGGCTTATTTAATAATTCAAAACACACAGCTAAAAGGCTTTAAAGACAGCATAACGCAAGTCGATAACCAGTCTATCATTAAAGTACTGATGCAGTATTTCCCTGACGGATTTGACCCTACTAAAAGTAAGTTACTTTTAAACAATAATGAAGTTGACTTTGTTGGTGGTGATTTAACCTATACACTAAAAGACGATGATAAGTTATTTGTTGTGCATGAGGTTAAGGCTGACCCATTAACTCTGATAGTTATTGCCGTTGCCGTTGTTGCCGCTGCTGTATCAATCGCACTAATACCTAAGCCGGCAATACCTAATCAGTCTGGAGAGAATCAAGACTCATCAAATAATATGTTTGCTGGCCAATCAAACATAGCGCGTACTTACCAAGCTTTTCCGTTTATTCTGGGCAAGATTAGAAGTTACCCTGATTTAATCGGTGAGCCAATTTATAGTTATGAGAATAACGAGCAGCTTATTAAGCAGTATTTCTCCGTTGGCTTTGGTGAAATTGACATTAGAGATATACGCATTGGTGAGTCGCTAATTGGTGGGTTTGAAGGCTCAACAACAAACATTTATCAACCATCGTCTAACGTGACAACAATTAACGATTATGTTGTTGGTTATTCATCTAGTGAGATTGAAGGGCAAATACTTAAAAAGACCAACGGCGGCGAGAATATAGTAAGCTACAACTTGAGCATTACTGGCAATCTAAGTCTTGTTAGCACTAGTTTAACTGAATTTTATATAGCGAAAGATACCGGCGGGAATGACCTAAAGGCTGACTTTGATGCGTTTGCAGGCTCTTTTTTAATGAAGATTGCTTACACCTACATGAATACAGAAAACGAGCCAAATGTAAGCATAGGTAGCGGTGTTGTGTCGTCTATTGATGATTTAGGTTCGTCATATAGAATTGTGTTTAATGCGTTTTCAGGTGACAGCACAAGCAATGTTATGTCTATTAACGCTGCATCGCAATCACAGCCTGGCGGTATTGGCTCAGTACCAATGAGTAATGAAGTTGAAGAATTATGGTTTAACTTTACTTTCCCTCGAGGCTTAAAGTCCGATGTTGATATTGAGATAGTAGTCGATCAACTTGACCAACAAAACGGGTCTCCAACAGGATTTACTTACATTCACAATGTAACATACACAGACGCAACATTAACGCCGCAATACATAACGCTTAAACTAAACTCAGAGCTAAACGGTTTGGGCTGGTATCGCTATTCAATAAAGCGTACAAATGATGAATCTGGCAACTCATCAAATCCAGACGAAATAAGAATAGAGCGAGTGCAGGGTATTGTTAATTATGCTGTAAGAAGCTTTGGCGATATAACTTTGATGGAGGTTAATCTGACCTCAAGTGGTGGAGTGCCAACAAGTAACAACACAAAAATTAACTGTACTGCAACAGCAATGGCGCCAACTAAAGACGACTTAACAACGCGCACTAGTCGCAAGTTTGCAGATGCTATACTTCACATGTATTTGAATTACTACAAACTACCTATCGACCAGTTAAACATTGATGACTTGTACGACATACAGGATAGGTTAGATGCTGAAAATCCAGAACTTGCATACTTTGATTTTAGTTTTGATGATGCCTCAGTTGATTTGCAGCAAAGAATGGAAACGATATGTAATGCGGCTAGGGTATCTACGTTTTTAACAAATGGACAGTGGCAGTTTGTACGCGATGAAAAGCGAGATTTCCCAGCGGGATTAATTACAGGTCGTGATATAGCCGGAGAAAATAGGGATTATTCAATAACTGGCGGCGGTTCAAACTCGTCTGATTATGATGGTGTGCGTGTTGAGTACATCGACCCAGTAAGCAACACAAAAAAGTACATTAGAAAAAAAGTAAGTAATGGCGCGTTTGTTGATGGTGAGTCATTTAATCCTAAAATAATGGAGTTGGCAGGCTGTAGAAATGAAACGCAAGCACGTAACAGGGCAGAGCTTGAAGTCAGAAAGTTAACTTATGAAGTTGAAACACTGACTGAGACAGTGCTGCCAAGTGGGTCAATATTTGACAAAGGTGATTTACTTCTATACGCAGAGCAATACGAAACAACAATAACGGACGGTGAAATATTAGCGGTTAACGGTCAAACTATAACGACAAGCGAGCTGTTAAAGTTTGAAGCGGGTAAAAACTATAAAATGTACCTAACCGGTATTGACGGCACAGTTTATGGGCCTAGAACCATAAACCCATATGCGCTTTCAGGCTCTTACAGATGCGCGATAGATGACCCGTCTAATATTTTTACTAGAGATAGTGTAATAGGTTATAATGTGCAGACAGGCAGCCGCTATATTATTGTTTCTGACTCGGACTTTGGTCAAACGAAATGGATATTAACTGAAAAAACGGCAAGCGGAAAATTAACACAGTTAACTATGGTTAACTATGATGAGCGAGTTTATGACTATGACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
03973bb660e33f7f11616f81c78648bc5c59ad4e121a778085153db5a0558fb9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3014
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50