Protein

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Genbank accession
WPH64039.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,73
Protein sequence
MMACTDIIVKVVGDNQFITDQVSTVTDKAKEVTDTAAIVKQDADNAKQSSQEAQNSATEAAKHLGDIRAHQNPFYTKNKDILESTTTKGYNFKGGGVTVTETATDEFEINIPKSGDMLASTYDPNSVNADAFDRSNHKGELPISTITGLQPELDSKLEASEYTEAEVKQMYESNADTNAFTDADKTKLDSVDLDVDMKTSVYDPNGVNADAFNPDNFDFSQFSDDAVLTVVGGKLSDSRVLAKDGSINTKSNSLSIGPHYISSAAENVMFKNLWNDKIFTPVWQRITRDKTWIPTYRMYTDSQIADVFIESNSSGVIANPVFSRTVPDNHRTWSIILKPAVSLSGVKMKLEFNGRTAFDDVIGDFVKDTTFKYDLDSNTTPIDVLQGETFIISFYHDTDDVLLYGNQSSNVPYMMISIRRFKEVPLISGDGTGNGDMLKAIYDPDDDGSVTLSDNLKGASTAGNTKYYGTNAVGVPGFYTLPNGGVGSGDMLKTDYDSNDDGIVNEADIASAIKGIATAAARSYYGTDSTNTPGFYPLPDFASMLSSINKNDQDIATLKASSQAHETAINNHASQIASNTSRIATNEKNIKVALDTSRASDEHLTAFRKSAVNGITADIDNNRRTITLSLFSPIGHVDSALIDLSSWFSGGQPPTGDDYTIYYGLADSTAIEESQITAGSTKVTKSINGLEIVITRSSPAAKYVWVWIPTAAGTVKGFEFSGFLSVWNSLPIPVGGEDGKVYLSPKPLTATSINFEVKA
Physico‐chemical
properties
protein length:759 AA
molecular weight: 82096,83570 Da
isoelectric point:4,61160
aromaticity:0,08564
hydropathy:-0,35178

Domains

Domains [InterPro]
DC_1374
STR
171–488
DC_1374 IPR018247
DC_1058
STR
483–759
DC_1058
G3DSA:1.20.5.340
STR
505–629
G3DSA:1.20.5.340
WPH64039.1
1 759
Architecture
STR
STR 171-759
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPH64039.1
1 759
Domain Start End Length (AA) Confidence
N-terminal 1 268 268 0,9805
Central domain 269 748 481 0,4752
C-terminal 749 759 10 0,1768
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-268
Central
269-748
C-terminal
749-759

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpP_1
[NCBI] 		3092672 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPH64039.1 [NCBI]
Genbank nucleotide accession
OR734989 [NCBI]
CDS location
range 24595 -> 26874
strand +
CDS
ATGATGGCTTGTACTGACATAATTGTAAAAGTCGTTGGCGACAATCAATTTATAACTGATCAAGTCTCCACAGTAACCGACAAAGCGAAAGAGGTTACAGATACCGCCGCGATAGTAAAACAAGACGCAGACAACGCGAAGCAGAGCAGCCAAGAGGCTCAAAACTCGGCTACTGAAGCGGCTAAGCACCTTGGCGACATCAGGGCGCATCAAAACCCGTTCTACACCAAGAACAAGGATATTTTAGAGTCTACGACTACTAAAGGTTACAACTTCAAAGGTGGCGGCGTAACTGTAACCGAAACGGCTACAGATGAGTTTGAGATCAATATTCCCAAATCGGGGGATATGCTTGCTAGTACCTACGACCCTAACTCTGTAAACGCTGATGCTTTTGATCGCTCTAATCATAAGGGCGAATTACCTATATCAACAATTACGGGTCTTCAGCCTGAACTAGATAGCAAGCTTGAAGCTTCTGAATACACAGAGGCGGAAGTTAAGCAGATGTATGAAAGCAATGCAGATACAAACGCATTTACTGACGCTGACAAGACAAAGCTTGATTCTGTTGATCTTGATGTTGATATGAAAACTTCAGTTTATGACCCTAACGGGGTTAACGCTGATGCTTTCAATCCTGATAACTTTGATTTCTCTCAGTTCTCTGACGATGCTGTTCTTACTGTTGTTGGCGGCAAGCTATCAGACTCAAGAGTTTTAGCCAAAGATGGGAGTATTAACACAAAATCAAACTCATTGAGCATTGGTCCACACTATATTTCTAGTGCGGCTGAAAACGTGATGTTTAAAAACCTTTGGAATGACAAGATATTCACCCCAGTATGGCAAAGAATTACTAGAGATAAAACTTGGATTCCTACTTATCGAATGTATACGGATAGTCAGATCGCTGATGTATTTATCGAATCAAACTCAAGCGGTGTTATTGCAAACCCTGTATTTTCTAGGACGGTTCCAGACAATCACAGAACTTGGAGCATCATATTGAAGCCAGCCGTTTCATTGAGCGGCGTAAAAATGAAACTGGAATTTAACGGTCGCACTGCGTTTGATGATGTTATAGGCGATTTCGTTAAGGATACAACTTTTAAATATGACCTAGACAGCAACACAACACCGATAGATGTTTTGCAGGGTGAAACCTTCATAATTTCATTTTATCACGATACTGATGATGTTCTTTTGTATGGAAATCAATCAAGTAACGTCCCTTACATGATGATATCGATCAGGAGATTCAAAGAAGTTCCCCTTATTTCTGGTGATGGGACTGGCAACGGCGACATGCTGAAAGCCATTTATGATCCTGATGATGACGGCTCCGTTACCCTTTCTGACAATTTGAAAGGTGCATCAACAGCCGGGAACACAAAATATTACGGCACAAATGCGGTAGGAGTGCCGGGATTCTACACGCTACCAAATGGCGGTGTTGGTTCTGGCGACATGTTGAAGACTGATTATGATTCCAATGATGACGGAATTGTTAATGAGGCGGATATTGCAAGCGCTATAAAAGGCATAGCTACGGCGGCGGCGAGATCTTATTACGGCACAGATAGCACCAACACGCCCGGATTTTATCCGCTTCCTGATTTCGCCTCTATGCTGTCAAGCATCAACAAAAACGATCAGGACATCGCAACTCTAAAAGCCTCATCTCAAGCGCATGAAACAGCTATAAATAATCACGCATCCCAAATCGCCTCCAACACATCAAGAATTGCAACCAATGAAAAAAATATAAAGGTTGCTCTTGATACTTCAAGAGCATCTGATGAGCACTTAACAGCATTCAGAAAAAGCGCGGTTAATGGCATTACGGCCGACATAGACAACAACCGCAGAACAATAACTTTAAGCTTATTTTCTCCTATTGGTCATGTTGACTCTGCTCTAATCGATCTTTCATCTTGGTTTTCGGGAGGCCAACCGCCAACGGGGGACGATTACACGATCTATTATGGGCTGGCTGACTCAACCGCCATAGAAGAAAGCCAAATAACCGCCGGAAGCACAAAAGTTACCAAATCAATTAACGGGCTTGAGATTGTAATCACAAGGTCATCCCCGGCGGCTAAATATGTTTGGGTTTGGATTCCAACGGCGGCGGGAACTGTTAAAGGGTTTGAGTTTAGTGGCTTCCTTTCCGTTTGGAATTCTTTACCAATCCCGGTGGGAGGTGAGGACGGAAAAGTTTATTTGTCACCTAAACCATTAACGGCAACAAGTATTAATTTTGAGGTTAAAGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c97a65acfc1f1c8a16a04c3c62088569d8ff7b8d20b48bc461c7cc4aa38e5120
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5593
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification and host range expansion of a novel lytic Vibriophage vB_VpP_1 and its application of biocontrol against Vibrio parahaemolyticus in oyster Li,F., Zhang,D.F., Bai,W.T., Li,X.P. and Li,J.R. 2022-04-07 — GenBank