Protein

View in Explore
Genbank accession
QYC52519.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MAKLKGITGNQNGVFYGYALYDLKGGRMIPFDELGTGSGEVEQGPVGPQGPAGPKGDTGPIGPVGPRGPQGPIGPKGDNGPKGDEGLNGDIGPQGPKGDRGDTGPEGPVGPIGPRGPVGPSGATGLNWKGQYSPTETYLLNDAIAYNGATYFSIKESTGISPEQDPTDEYWAIMAASGAKGDTGPQGPTGPEGPKGDPGEQGVQGPRGPVGETGPAGPRGPEGVEGPTGPQGIQGPRGEKGVNWRGNWFRNTTFSPTDAVFF
Physico‐chemical
properties
protein length:262 AA
molecular weight: 26429,62110 Da
isoelectric point:4,70163
aromaticity:0,07252
hydropathy:-0,79275

Domains

Domains [InterPro]
DC_1939
ATT
2–45
DC_1939 DC_1060
IPR050149
Unmapped
42–241
IPR050149
IPR008160
STR
43–96
IPR008160 IPR008160
DC_1687
STR
208–260
DC_1687
QYC52519.1
1 262
Architecture
ATT
STR
ATT 2-45 | STR 46-260 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SSBI34
[NCBI] 		2861009 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC52519.1 [NCBI]
Genbank nucleotide accession
MZ520832.1 [NCBI]
CDS location
range 56372 -> 57160
strand +
CDS
ATGGCAAAGCTTAAGGGTATTACTGGGAATCAAAACGGAGTATTCTATGGCTACGCCCTGTACGATTTAAAAGGCGGAAGGATGATACCTTTTGATGAGTTAGGGACAGGCAGCGGAGAGGTAGAGCAGGGGCCTGTAGGACCACAAGGACCTGCTGGACCTAAAGGAGATACAGGCCCAATAGGACCTGTCGGACCTCGAGGACCTCAAGGACCTATTGGACCAAAGGGTGATAACGGACCTAAAGGGGATGAAGGACTAAACGGAGATATTGGACCTCAAGGTCCTAAGGGGGATCGTGGGGACACAGGACCAGAGGGTCCAGTTGGACCTATTGGACCGAGAGGACCTGTAGGCCCTTCTGGTGCCACAGGTTTGAATTGGAAAGGTCAATACTCACCAACAGAGACATACCTGTTGAATGACGCCATAGCTTACAACGGTGCCACTTACTTTTCCATAAAAGAATCAACAGGTATTAGCCCAGAGCAAGATCCAACAGATGAATATTGGGCGATAATGGCGGCTTCTGGAGCTAAAGGTGACACAGGGCCTCAAGGACCCACTGGTCCAGAAGGTCCCAAGGGAGACCCAGGTGAACAAGGTGTTCAAGGACCTCGAGGACCTGTCGGTGAAACAGGTCCTGCTGGCCCAAGAGGTCCTGAGGGAGTAGAGGGACCAACAGGTCCTCAAGGAATTCAAGGACCTCGTGGAGAAAAGGGTGTAAACTGGAGGGGGAATTGGTTTAGAAACACTACATTCAGCCCTACCGATGCCGTATTCTTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
5f297a9d760d0a7421a5fbe7b635368ecc130129430c36e6d42334deb3087205
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7547
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
SE-Phage-SSBI34 a novel bacteriophage of Salmonella typhimurium, provides insight in to genus certrevirus Sattar,S., Khanum,S., Altermann,E., Bailie,M., Shamsi,B. and Ullah,I. 2022-01-25 — GenBank