Protein

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Genbank accession
QXV74258.1 [GenBank]
Protein name
WD40/YVTN repeat-like domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTVSFTEQTINATISGTVRDFAISPDGTLILACTSVDTYLLKWDAVNNRWNAVTISGKSGAEPGVAPGFAIDNSYCWFQKNANLDQSASNAYIRWQNVSGTWTENYNTTGGTRMKAFKPGPSNQMIALYYDQLYLWTNVQGTPGSLVGPFFTGASAVIPNDGAWSPDGNHIAITRRNGTVLVYRSAGGWTADTVSGGGSGAGNWRVQWIDNTHFLMSEAEVANGLYLGTLTATNTWTVTAIDTTFSSYASFIMDDGKLAGYFNSAANAAAKVWDFSTGSMVSTTESGLPTNQTIVAARSRQTGGGNKTLAIAPSTGGMRVFSLMVSATAPVVYPKFGIASTIHAQDGALGALSYQKFTASGNIHVPIGANGAYSFSGFKIAGLAGVFDPEYPEMQPWQWKGVVGVENQSVVFSEETPTEPWLYSNLSFSKFAMDNHVSVIVYGNGALLLPKFQIYAVSGEITAEADYLLPKFGVAGSLFDYDEVHANIVYPFAQVHSTLNLLDKVNSAYVLPKFAVNGTVEFILANGDLVFPKFDVDVNAATSRATGSLLYAVYTVNADANVPVGVLANYTAPRFAIDGTVDVPIGINGNYTLPKFLVEGVGGITNAINADALYQTFKLSGVVQPTHSADASLRYSKYVIEAFIGPEQKGNADIVYPKFGTAFVVDNYYGVALDADLSLTFEGEAENTKRRKTISVFEH
Physico‐chemical
properties
protein length:699 AA
molecular weight: 74825,93340 Da
isoelectric point:5,03721
aromaticity:0,12017
hydropathy:0,02132

Domains

Domains [InterPro]
IPR015943
STR
5–221
IPR015943 DC_1393
IPR001680
RBD
13–44
IPR001680
SSF82171
STR
16–330
SSF82171
SSF82171
STR
16–325
SSF82171
QXV74258.1
1 699
Architecture
STR
STR 5-699
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QXV74258.1
1 699
Domain Start End Length (AA) Confidence
N-terminal 1 23 23 0,3488
Central domain 24 291 269 0,8606
C-terminal 292 699 407 0,0286
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-23
Central
24-291
C-terminal
292-699

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHEph12
[NCBI] 		2836128 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QXV74258.1 [NCBI]
Genbank nucleotide accession
MW980064 [NCBI]
CDS location
range 188384 -> 190483
strand +
CDS
ATGACGGTAAGTTTTACTGAGCAGACAATCAACGCAACCATTTCCGGCACAGTTCGCGATTTTGCTATCTCGCCGGATGGCACGCTCATTCTAGCGTGCACTTCTGTCGATACGTATCTTCTCAAGTGGGATGCAGTAAACAATCGCTGGAATGCTGTAACCATTTCTGGTAAAAGCGGCGCGGAACCGGGGGTCGCTCCCGGCTTTGCCATCGATAACTCATATTGTTGGTTTCAAAAGAATGCCAATCTCGATCAGTCTGCCTCGAATGCGTATATCCGTTGGCAGAATGTAAGCGGCACTTGGACTGAAAATTATAACACGACTGGCGGAACGCGTATGAAAGCGTTCAAGCCCGGTCCTAGCAACCAGATGATCGCGCTGTATTACGATCAGTTATACCTATGGACAAACGTTCAAGGTACGCCCGGTTCGCTAGTTGGTCCGTTCTTTACCGGCGCTTCGGCTGTTATACCAAACGACGGCGCATGGTCGCCGGATGGCAACCACATCGCTATCACGCGGCGAAACGGTACTGTGCTGGTATATCGCAGCGCGGGCGGTTGGACTGCCGATACCGTGAGCGGCGGTGGCTCTGGCGCTGGTAACTGGCGCGTGCAATGGATCGACAATACGCACTTCCTTATGTCGGAAGCCGAAGTTGCGAACGGCCTGTATCTCGGCACGTTGACCGCGACCAATACGTGGACGGTTACCGCTATCGACACCACGTTTTCTTCCTATGCCTCGTTCATTATGGACGATGGTAAGTTGGCAGGTTATTTCAACAGCGCTGCAAATGCGGCTGCCAAGGTTTGGGATTTCAGCACCGGCTCGATGGTTTCTACCACAGAGTCCGGCCTGCCGACAAACCAAACCATCGTCGCTGCGCGCAGCCGACAAACTGGCGGTGGTAACAAGACGCTAGCCATCGCACCATCGACTGGTGGCATGCGCGTTTTCTCGCTCATGGTTTCTGCAACTGCGCCGGTTGTCTACCCTAAGTTCGGTATTGCCTCGACGATACATGCGCAAGACGGTGCCCTTGGTGCGCTGTCTTACCAAAAGTTCACGGCGTCTGGAAATATCCATGTTCCTATCGGCGCAAACGGCGCGTACTCGTTCAGCGGCTTCAAAATAGCTGGCCTTGCGGGCGTGTTCGATCCGGAATATCCGGAGATGCAGCCGTGGCAGTGGAAAGGCGTGGTAGGTGTCGAAAACCAAAGCGTAGTATTCAGTGAAGAGACTCCTACCGAACCGTGGCTGTACAGCAATCTCAGCTTTAGCAAGTTCGCCATGGACAACCATGTGAGCGTGATTGTTTACGGCAACGGCGCGCTTCTATTACCAAAGTTCCAAATCTACGCAGTGTCGGGTGAGATTACTGCCGAAGCTGATTACCTGCTGCCCAAGTTTGGCGTTGCCGGTTCTCTATTCGATTACGACGAAGTGCACGCGAATATCGTCTATCCGTTTGCTCAAGTCCATTCCACGCTGAATTTGCTGGACAAGGTAAACAGCGCCTACGTTCTACCAAAGTTCGCTGTCAACGGCACTGTCGAATTCATCCTTGCCAACGGCGATCTCGTCTTCCCGAAATTCGACGTGGATGTGAATGCAGCTACTAGCAGGGCAACCGGCTCGTTGCTGTACGCGGTCTATACCGTCAATGCGGATGCGAACGTTCCGGTCGGCGTTCTAGCCAACTACACGGCACCGCGTTTCGCTATCGATGGCACGGTTGACGTTCCCATTGGTATAAACGGAAACTACACTCTGCCGAAGTTCCTCGTAGAGGGTGTCGGCGGAATTACCAATGCCATCAACGCCGACGCGCTGTATCAAACGTTCAAGTTGTCTGGCGTTGTACAACCAACGCATTCTGCCGACGCGAGCTTGCGCTACAGCAAGTATGTCATCGAGGCGTTCATCGGTCCCGAGCAGAAAGGCAATGCTGATATCGTGTATCCCAAATTCGGAACGGCTTTCGTGGTAGATAACTACTACGGTGTCGCGCTAGACGCTGATCTCTCCCTTACTTTTGAGGGCGAAGCAGAAAACACGAAACGGCGCAAAACGATCAGCGTGTTTGAGCATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
68d52b8a3e842a404ef551a7717d215e21fa716a5aeab535a962832b1c28764a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5022
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity of Double-Stranded DNA Phages in the Symbiotic Bacterium Rhizobium Santamaria,R.I., Bustos,P., Cauwenberghe,J.V. and Gonzalez,V. 2011 — GenBank