Protein

View in Explore
Genbank accession
QAX92061.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,74
Protein sequence
MIPTIGDVVAISDNFWSSNLTMNLSGRLLEVSGSQIFLPFRVDARAGDFIIVNKPDGKPVKRTISSVSADGKTIEINIGFGFPVKPNTVFAIDRTDIALQQYVVTKIDKGDDDEEFTYKITAVEYDPNKYDEIDYGVNIDDRPTSIVEPDQIPKPENVQVSSESRIVQGMSVETMIVSWDKVPYAVFYDVQWRKDNGNWQNVPQTANKEVYVEGIYAGNYQVRVRSVAGSGTTSGWSNIVAATLTGKQGEPGRPINLTATDDVVFGIRTKWGFSDGSGDTAYTELQQSPDGTVDNASLLSLIPYQGRLTGSVTYLSGLILSEAWHQQTLTISSGRFLSISKTHLVTSGLLITQQTTRRRTQLMQRQQ
Physico‐chemical
properties
protein length:367 AA
molecular weight: 40537,94790 Da
isoelectric point:4,98821
aromaticity:0,08719
hydropathy:-0,30817

Domains

Domains [InterPro]
DC_0846
STR
1–362
DC_0846
IPR053171
Unmapped
3–305
IPR053171
IPR003961
STR
153–243
IPR003961
IPR036116
STR
153–242
IPR036116
IPR013783
STR
153–246
IPR013783
IPR003961
STR
154–248
IPR003961
QAX92061.1
1 367
Architecture
STR
STR 1-362 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage vB_SsoS_008
[NCBI] 		2507846 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sonnei
[NCBI] 		624 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QAX92061.1 [NCBI]
Genbank nucleotide accession
MK335533 [NCBI]
CDS location
range 30224 -> 31327
strand +
CDS
ATGATTCCGACAATCGGAGACGTGGTGGCAATATCTGATAACTTCTGGTCAAGTAACTTGACGATGAACCTGTCAGGGCGATTGCTCGAAGTGTCAGGTAGTCAGATTTTCCTGCCGTTCCGCGTTGATGCGCGCGCAGGTGACTTTATTATCGTAAATAAGCCAGATGGCAAGCCTGTGAAGCGCACAATCTCAAGTGTTAGTGCGGATGGTAAGACCATAGAGATTAACATCGGCTTTGGCTTTCCTGTGAAGCCTAACACGGTATTCGCTATCGACCGCACAGACATTGCGTTACAGCAGTACGTCGTGACAAAAATCGATAAGGGTGATGATGATGAGGAATTTACCTACAAGATCACGGCGGTGGAGTACGATCCTAATAAGTATGATGAAATTGATTACGGGGTTAACATCGACGACCGACCGACAAGCATCGTTGAGCCAGATCAGATCCCTAAGCCGGAAAACGTGCAAGTGTCCTCAGAGTCGAGAATCGTCCAGGGGATGAGCGTAGAGACGATGATTGTTAGCTGGGATAAAGTTCCGTACGCTGTTTTCTATGACGTACAGTGGAGAAAGGATAACGGCAACTGGCAAAACGTTCCGCAGACAGCAAACAAAGAGGTTTATGTTGAAGGGATTTACGCTGGCAACTATCAGGTTCGCGTGCGCTCCGTCGCTGGTTCGGGCACGACTTCAGGCTGGTCAAATATCGTCGCGGCAACGTTGACGGGTAAACAGGGTGAGCCGGGTCGACCGATTAACCTTACAGCTACGGATGATGTTGTTTTTGGTATCCGTACAAAATGGGGGTTCTCTGATGGTTCTGGAGATACAGCCTATACAGAGTTGCAACAGTCACCGGATGGAACAGTGGATAACGCGAGTTTACTCTCTCTGATCCCGTATCAAGGACGGTTGACAGGATCGGTAACGTATCTCAGTGGACTGATTTTGTCAGAGGCATGGCATCAACAAACGTTGACGATATCATCGGGGAGATTTCTGTCGATATCGAAAACTCACCTGGTTACGAGTGGCTTGTTGATAACGCAACAGACAACGCGTCGCAGAACTCAGCTAATGCAGAGGCAGCAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e6cd04947fd355192be833fd954f70816e031e847e8b896c1bf31e016c1be666
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7524
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of novel bacteriophages infecting Shigella spp. and E. coli O157: H7 Shahin,K., Barazandeh,M., Bao,H. and Wang,R. 2020-06-17 — GenBank