Protein

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Genbank accession
YP_009219522.1 [GenBank]
Protein name
putative tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,68
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAVGEIQISALPQAALPIDLSDIFHLKQGIEDKRCTLEQLLAPHSSLRNNPHGVTKTQIGLDNVINALQLVAANNLSDIVNVAEARANLQIMSSEEVNSLIQQHINDKSNPHNTTKAQVGLSNVQNWTTSNLYNEDADKYATARAVNNLYKAVQASYPVGTLHLSMNSANPATYLICGGTWELVSKGRALVGYSDNSRPVGSNFGSSSVSLSSNNLPSHSHSIYLTGGNHSHGANVSVSAFDYGTKSTSSFDYGTKTTNTTGAHTHSVSGSTNTTGAHTHGYVTGYQDTGASGDWDRDGHRNTVQTDSAGNHSHSISGTAASNGNHNHTVAIGSHSHTVAIGAHSHNVTVSITGVGEHTHSGTTGSVGAGQAFSVEQPSFVVYVWQRTA
Physico‐chemical
properties
protein length:389 AA
molecular weight: 40943,06470 Da
isoelectric point:6,38855
aromaticity:0,05656
hydropathy:-0,39152

Domains

Domains [InterPro]
DC_1039
STR
1–389
DC_1039
IPR051934
Unmapped
102–352
IPR051934 IPR005003
IPR053827
ATT
154–274
IPR053827 IPR005003 IPR005003
YP_009219522.1
1 389
Architecture
STR
ATT
STR
STR 1-153 | ATT 154-274 | STR 275-389
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009219522.1
1 389
Domain Start End Length (AA) Confidence
N-terminal 1 205 205 0,6807
Central domain 206 378 174 0,1232
C-terminal 379 389 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-205
Central
206-378
C-terminal
379-389

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage JH2
[NCBI] 		1340750 Uroviricota > Caudoviricetes > Andersonviridae > Felixounavirus > Felixounavirus JH2
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009219522.1 [NCBI]
Genbank nucleotide accession
NC_029023 [NCBI]
CDS location
range 48709 -> 49878
strand -
CDS
ATGGCAGTAGGTGAAATTCAAATTAGTGCCTTGCCTCAAGCAGCCTTACCAATTGACCTTAGTGATATCTTCCATCTTAAGCAGGGTATTGAGGATAAGAGATGTACTCTTGAGCAACTACTTGCTCCACACTCAAGCCTAAGAAATAACCCTCATGGTGTTACTAAGACACAAATTGGTCTAGACAATGTTATTAATGCTCTTCAGTTAGTTGCTGCAAATAACTTATCAGATATTGTTAATGTAGCTGAGGCAAGAGCAAATCTACAGATTATGTCTTCAGAAGAGGTTAATAGCCTTATTCAACAGCATATTAATGACAAGAGCAACCCACACAATACAACTAAGGCGCAGGTTGGTTTAAGTAATGTCCAGAACTGGACAACATCTAACCTTTATAATGAGGATGCAGATAAGTACGCTACAGCAAGAGCAGTAAATAACTTGTATAAGGCTGTTCAGGCTTCTTATCCTGTTGGTACATTGCACCTTTCGATGAACTCTGCTAACCCAGCTACCTACCTAATTTGTGGAGGTACTTGGGAGTTGGTATCAAAAGGTCGGGCATTAGTAGGCTACAGTGATAACTCAAGGCCAGTCGGTAGTAACTTTGGCTCTAGTAGTGTTAGTTTGTCTAGCAACAATTTACCATCACACAGTCATTCTATCTACCTAACAGGTGGAAATCATAGTCATGGTGCAAATGTCTCAGTTAGTGCGTTTGATTATGGTACTAAATCAACCTCGTCATTTGATTACGGTACTAAGACCACAAACACTACTGGTGCTCATACACACTCTGTGAGTGGTTCAACAAATACAACAGGTGCTCACACGCATGGATATGTCACTGGTTACCAAGATACTGGTGCGTCAGGGGACTGGGATAGGGATGGGCACAGGAATACTGTTCAGACAGATAGTGCTGGTAACCACTCTCACTCCATCAGTGGTACTGCTGCGTCTAATGGTAATCATAATCACACGGTGGCTATTGGCTCGCACTCACACACTGTTGCTATCGGGGCACATTCACACAATGTAACGGTTAGCATTACTGGAGTTGGAGAACACACCCATTCAGGAACTACAGGGTCTGTTGGTGCTGGTCAAGCATTTAGTGTTGAGCAACCATCTTTTGTAGTTTATGTATGGCAAAGAACAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
976ad1c338a3cd0ce2c508a0f8085a939768d3f7eee4f4d613b9555a0587d538
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7233
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic sequence of a broad host range bacteriophage infecting Escherichia coli shared high simialrity to Staphylococcus phage SA1 Nguyen,X., Tang,F., Bai,Q., Shen,C., Vo,T., Zhang,W. and Lu,C. 2024-06-23 — GenBank