Protein

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Genbank accession
YP_009908499.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPYIDITTMRGMMPRVVTSMLPEHSAVLAEDCHFRFGVITPERQISGVEKTFTIKPKTIFHYRDDFWFAWPDVVDVIRSPIAQDPHGRIYYTDGRFPKVTDATIATKGDGNHPTSSYRLGIPAPTTAPVCTVQQGGDVSDDNPNDDETRFYTETFVSDYGEEGPPGPASLEVTLRTPGTAVQLTLAPVPLQNANIKRRRIYRSASGGGEADFLLVAELDASVLSYTDKIPTKNLGPSLATWDYLPPPENMTGLCLMANGIAAGFAGNEVMFSEAYLPYAWPEVNRHTTAEDIVAICPLGTSLVVATKGEPYLFSGVSPSTISGSRIPSMQACLSRRSMVAMEGFVLYAGTNGLVSVDVNGNTALATEKIISPEQWQSQFNPMSIVAYSWRGDYIGCYTKPDGKQDVFVFSPANMDIRYLSTPFDCAWIDLAKDMMRVVTGDKMSVLAGDSLPSMIRWHSKIFSLPERTSFSCIRVKSPAPERVGITVMADDVPVIHFAPGTFKGSVVRLPAATGQNWQVMVSGFGQVERITLSTSMSEMPV
Physico‐chemical
properties
protein length:541 AA
molecular weight: 59155,78200 Da
isoelectric point:5,24893
aromaticity:0,09242
hydropathy:-0,09908

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009908499.1
1 541
Domain Start End Length (AA) Confidence
N-terminal 1 57 57 0,9792
Central domain 58 256 200 0,0127
C-terminal 257 541 284 0,4866
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-57
Central
58-256
C-terminal
257-541

Taxonomy

  Name Taxonomy ID Lineage
Phage Stx converting phage vB_EcoS_P27
[NCBI] 		1792287 Uroviricota > Caudoviricetes > Sepvirinae > Traversvirus P27 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009908499.1 [NCBI]
Genbank nucleotide accession
NC_049925 [NCBI]
CDS location
range 41908 -> 43533
strand +
CDS
ATGCCCTATATCGATATCACCACGATGCGTGGGATGATGCCGCGCGTTGTGACATCCATGCTGCCCGAGCATTCCGCTGTACTGGCGGAGGACTGCCATTTCCGGTTTGGTGTTATTACACCAGAACGTCAGATATCCGGGGTTGAGAAAACATTCACAATTAAGCCAAAAACAATTTTTCATTACCGTGACGATTTCTGGTTTGCATGGCCGGATGTGGTGGATGTGATCCGCAGTCCGATCGCTCAGGACCCCCACGGGCGTATTTACTACACTGACGGGCGTTTTCCTAAAGTGACGGATGCGACTATTGCCACAAAAGGGGACGGGAATCACCCGACATCATCGTATCGTCTGGGGATCCCCGCGCCGACGACAGCTCCTGTCTGTACTGTTCAGCAGGGCGGTGATGTTTCTGACGATAACCCGAATGATGACGAAACCCGGTTTTATACTGAAACCTTTGTCTCAGATTATGGTGAAGAAGGTCCGCCTGGTCCGGCGTCTCTGGAGGTAACACTCCGTACTCCGGGGACTGCGGTACAACTGACGCTGGCTCCGGTGCCATTGCAGAATGCCAATATTAAACGTCGCCGGATTTATCGCTCTGCATCAGGTGGAGGAGAAGCGGATTTTTTACTTGTGGCTGAACTGGATGCGTCAGTGCTCAGTTACACGGACAAAATACCGACGAAAAACCTTGGGCCTTCCCTGGCAACATGGGATTACCTGCCGCCACCGGAGAATATGACGGGTCTTTGCCTGATGGCTAATGGTATTGCTGCCGGGTTTGCCGGTAATGAAGTGATGTTTTCGGAAGCGTATCTGCCGTATGCATGGCCGGAAGTGAATCGTCACACGACGGCAGAAGATATTGTGGCTATCTGTCCGCTGGGAACGTCACTGGTGGTGGCGACAAAGGGGGAGCCTTATCTGTTCAGTGGTGTATCGCCTTCCACAATTTCTGGCTCCAGAATTCCTTCCATGCAGGCATGCCTGAGCCGAAGAAGCATGGTGGCGATGGAGGGATTCGTACTGTATGCCGGGACAAACGGTCTGGTATCTGTTGATGTAAACGGTAATACAGCACTGGCAACGGAAAAGATTATTTCACCAGAACAGTGGCAGAGTCAGTTTAACCCGATGTCCATTGTGGCTTATTCCTGGCGTGGTGACTATATCGGTTGTTACACAAAACCGGATGGTAAGCAGGATGTGTTTGTATTCAGTCCGGCGAACATGGATATCCGTTATCTCAGCACGCCGTTTGACTGTGCATGGATTGATCTTGCAAAAGATATGATGCGCGTGGTGACAGGGGACAAAATGTCAGTGCTTGCCGGGGACTCTCTGCCGTCCATGATAAGGTGGCATTCAAAAATTTTTTCATTACCTGAAAGAACCTCTTTTTCCTGTATCAGAGTGAAATCTCCGGCACCTGAGCGGGTGGGGATCACTGTTATGGCTGATGATGTTCCTGTGATTCATTTTGCGCCGGGTACGTTTAAGGGAAGTGTGGTGAGACTTCCGGCAGCAACCGGGCAAAACTGGCAGGTGATGGTATCCGGATTCGGGCAGGTGGAACGAATAACCCTGAGTACATCGATGTCGGAGATGCCGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8559156e5a4151bfea6bd24952a8d0be9a382c9eb528b8cacc46993a12b95e27
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9335
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Interplays between Shiga toxin-converting bacteriophages: plausible roles of RNA polyadenylation, oop RNA and the exo-xis region Gasior,T., Los,J.M., Nowicki,D., Licznerska,K., Dydecka,A., Bloch,S., Topka,G., Los,M., Wrobel,B., Nejman-Falenczyk,B., Szalewska-Palasz,A., Wegrzyn,G. and Wegrzyn,A. 2017-08-25 — GenBank