Protein

View in Explore
Genbank accession
XCO39458.1 [GenBank]
Protein name
VFDB virulence factor protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQYLYVDPSDDTNKPIPSAFKTVTAAIAAITSYPFSILIRRGTVLTEAVNARLLNTSSQMSFIDTYGDGPPPKWLSTSKSAGQLASWNARRITVQNIHFMDRDDGFTSAATSVNFQCSGDADGISDVHVKNCYFTGNAYSVSNPSKTMVGRHVQLFGVGYNADVATPAHKLSVEDCMFDMVNAGVYIRGNTYAADTTDNRGDGSRTYGAKVLRCSFTNVVQEGALVHTCASKNDVYTDDEWQSCVRDCYYSSYRWDKFSTSGTSTYDAPFWMWHCNRVMFEKLEVHGSYPMAPDNMAVDIDGMCWDNVVRYVYSTGCARTVMFVSADNAGLQPAPPEGMSNFEFYYTRRQGSGNNVVEYCFAFNDGIQRLQGQVGTPTNDACSISHHRNQFNNTVRNCVFIDTSSVRQRRLITTNSYDTENASIPSLTVENCIFYCKWMRDADIIAKVAVAGKTPAPASQIILHNNIIWSDAWSAAPDLSALATLSNITWAKPQYALLPPSPPSTRRGAVNLGIPTNAKGAGTSNLMLDINGRSGNNIGWLQ
Physico‐chemical
properties
protein length:542 AA
molecular weight: 59656,09440 Da
isoelectric point:6,20701
aromaticity:0,10517
hydropathy:-0,28911

Domains

Domains [InterPro]
DC_1961
STR
1–542
DC_1961
IPR011050
STR
4–270
IPR011050 IPR012334
IPR011050
STR
267–496
IPR011050
XCO39458.1
1 542
Architecture
STR
STR 1-542
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCO39458.1
1 542
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0692
Central domain 11 510 501 0,9937
C-terminal 511 542 31 0,8839
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-510
C-terminal
511-542

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage phi1_146029
[NCBI] 		3232209 Viruses >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCO39458.1 [NCBI]
Genbank nucleotide accession
PP889479 [NCBI]
CDS location
range 147089 -> 148717
strand +
CDS
ATGCAATACTTATATGTTGACCCGTCAGATGACACAAATAAGCCGATACCGTCGGCATTTAAAACCGTAACGGCAGCGATTGCGGCGATCACCAGTTACCCGTTCTCGATATTAATTCGCAGGGGGACTGTGCTGACCGAGGCAGTAAATGCCCGACTACTCAACACGTCGTCACAAATGAGCTTTATCGACACCTATGGTGATGGGCCTCCCCCGAAATGGCTGTCCACATCAAAATCGGCGGGGCAGCTGGCATCGTGGAACGCCCGGCGCATTACGGTTCAGAACATCCATTTCATGGACAGGGATGACGGGTTTACCTCGGCAGCAACCAGTGTTAACTTTCAATGCTCGGGTGACGCCGACGGTATTTCTGATGTGCACGTTAAAAACTGCTACTTCACCGGCAATGCGTACTCCGTAAGTAACCCATCCAAAACAATGGTTGGTAGGCATGTGCAACTGTTCGGCGTAGGCTATAATGCGGACGTTGCGACCCCTGCGCATAAACTGAGCGTAGAAGACTGCATGTTCGATATGGTCAACGCCGGGGTCTATATCCGTGGTAATACCTACGCCGCAGACACCACAGATAACAGAGGAGACGGCAGCAGAACTTACGGCGCGAAAGTCCTGAGATGCTCATTTACTAACGTAGTTCAGGAGGGGGCGTTAGTACACACCTGCGCCAGCAAAAACGACGTCTATACAGATGATGAGTGGCAGAGCTGCGTCCGTGACTGTTACTATAGCTCATATCGCTGGGATAAGTTCTCCACTAGTGGTACGTCAACCTATGACGCGCCATTCTGGATGTGGCACTGCAATCGGGTGATGTTTGAGAAACTGGAGGTACATGGCTCTTACCCGATGGCTCCTGACAATATGGCGGTTGATATCGACGGCATGTGCTGGGATAACGTTGTCAGGTACGTTTACTCCACTGGCTGCGCCCGTACCGTGATGTTCGTCTCTGCTGATAACGCAGGGCTACAGCCCGCGCCGCCAGAAGGGATGAGCAATTTTGAGTTTTATTACACCCGCAGGCAGGGGAGCGGTAACAACGTTGTTGAGTACTGCTTTGCGTTTAATGACGGTATTCAGCGACTCCAAGGGCAAGTGGGTACGCCTACAAACGACGCCTGCTCAATATCACACCACCGCAACCAGTTTAATAACACTGTGCGTAACTGTGTGTTTATTGATACCAGCAGCGTGCGGCAACGGCGACTTATCACTACCAACAGCTACGATACAGAAAATGCATCAATACCCTCTCTGACGGTGGAAAATTGCATCTTCTACTGTAAATGGATGCGAGATGCGGACATTATCGCTAAAGTCGCCGTTGCAGGGAAAACCCCCGCTCCGGCATCACAAATTATCCTGCACAACAACATTATCTGGTCTGATGCGTGGAGCGCAGCGCCTGACCTGAGCGCGCTGGCAACCCTGAGCAATATCACCTGGGCTAAACCACAGTACGCTCTGCTACCGCCCAGCCCGCCATCAACCCGTCGAGGCGCGGTTAACCTTGGTATTCCGACGAATGCAAAAGGTGCCGGCACCTCGAATCTGATGTTAGATATCAACGGGCGTTCCGGGAATAACATTGGCTGGTTACAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cc7e42e55e9c08d066cf2f980304b32ebf9b3c5a76bfaa02f9d1cba0ae927376
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7800
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Klebsiella pneumoniae phages Fang,Q., Luo,H., Feng,Y. and Zong,Z. 2016-02 — GenBank