Protein

View in Explore
Genbank accession
YP_004958090.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKKVKNSSQPGSLNKALPEKAKKAVDTIVDDIKKADGELDNSQDSFGFGGITVEAKPAKPFEATVVEPVNIPQRFSKYGRRVDITRKPELIVGGKEIELVVLKPEEYPRALSSTFYNHDKDNILVAPRDTSKHSVAHPGCTLERKDLKVYKAIVNGTEIFMTAGSSLIVKETVVKNGCSDPWDLEEGFNSTSIKDQDPVLVLIGSELTTSLLNVNGYNLLNNSSLESKTTYLMNSRVIASRLHSEETIDLDSTNLNSSVISGTKWLRSSKSDLALLNLGGIRHITLERVSTRGDGSFSLTTWANKDRLSLRIADITLTEFNMNFSSDDLPLDKNTGPDTVININRRVDYGYFSGIIHVPFIRINKFDMLVGDNVFTGKELNPTSFPQEEKKEELLPNPSPYGYTPPLYRPAPYSMGGARMDDTWNKARKIISFQAAGHNYSGKQNPLGTLGESLVDTLVDQIRSRNKLYIELFSFVK
Physico‐chemical
properties
protein length:478 AA
molecular weight: 53073,49990 Da
isoelectric point:7,07022
aromaticity:0,07531
hydropathy:-0,42050

Domains

Domains [InterPro]
DC_0897
STR
1–478
DC_0897
YP_004958090.1
1 478
Architecture
STR
STR 1-478
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004958090.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 274 274 0,3541
Central domain 275 467 194 0,6377
C-terminal 468 478 10 0,5629
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-274
Central
275-467
C-terminal
468-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage OBP
[NCBI] 		1124849 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004958090.1 [NCBI]
Genbank nucleotide accession
NC_016571 [NCBI]
CDS location
range 167250 -> 168686
strand +
CDS
ATGACTAAGAAAGTAAAGAACAGTTCTCAGCCCGGTAGCCTGAATAAAGCGCTCCCTGAGAAAGCAAAGAAGGCCGTTGATACCATCGTTGACGATATTAAAAAGGCTGATGGCGAACTGGACAACAGCCAAGACTCGTTTGGGTTTGGTGGTATTACGGTTGAAGCTAAACCAGCTAAGCCATTCGAAGCGACCGTCGTTGAGCCTGTGAATATCCCGCAGCGGTTTTCCAAATATGGCCGTCGTGTTGACATAACCAGAAAGCCAGAACTTATCGTGGGTGGTAAGGAAATCGAGCTGGTTGTATTAAAACCGGAAGAGTATCCGCGTGCTCTCAGCAGTACGTTCTATAACCACGATAAAGACAATATCCTGGTTGCTCCTCGTGATACATCCAAGCACTCTGTAGCACATCCAGGTTGCACTCTCGAGCGTAAAGACTTAAAGGTTTATAAGGCCATTGTCAATGGTACTGAAATCTTTATGACCGCAGGTTCTTCTCTGATCGTTAAGGAAACTGTCGTCAAAAATGGCTGCTCTGACCCGTGGGATCTTGAAGAAGGATTTAATTCCACTTCTATCAAAGATCAAGACCCAGTCCTGGTTCTTATTGGTTCGGAATTAACCACCAGTTTATTGAACGTCAACGGGTATAACTTGTTGAACAACTCTTCTCTGGAGTCCAAGACAACATACCTGATGAATTCTCGTGTGATTGCGTCCCGTCTCCACTCTGAAGAGACGATTGACCTGGATAGCACCAACCTGAACTCCAGCGTTATCTCTGGAACTAAATGGTTGCGTTCTTCTAAGTCTGACTTGGCGTTACTTAACCTCGGGGGTATCCGACATATTACTCTCGAGCGGGTTTCTACACGCGGTGATGGTTCGTTCTCTCTGACGACGTGGGCTAATAAAGACCGCTTATCTTTGCGCATTGCCGATATCACACTGACAGAATTCAATATGAACTTCTCGTCTGATGATCTGCCGCTGGATAAGAACACCGGACCTGATACGGTAATCAACATTAACCGTCGCGTAGACTATGGTTACTTCTCGGGGATTATCCACGTTCCATTCATCCGTATCAATAAGTTTGATATGCTGGTTGGTGATAACGTGTTTACTGGTAAAGAGCTGAATCCGACTTCCTTCCCTCAAGAAGAGAAGAAAGAAGAACTACTGCCAAATCCGAGCCCGTACGGTTATACTCCTCCTCTGTATCGCCCTGCCCCTTACTCTATGGGTGGAGCGCGTATGGATGATACCTGGAACAAAGCACGGAAGATCATTTCGTTCCAGGCTGCTGGTCATAACTATTCTGGTAAACAGAACCCACTGGGAACACTGGGGGAATCATTGGTTGACACATTAGTCGATCAGATTCGTTCCCGTAACAAACTGTATATTGAACTGTTTTCATTTGTAAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7b8624eb94e6e02a5d6f0d3ffdae990383ba92037fd23bc4223d9e9368bd93e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3908
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50