Protein

View in Explore
Genbank accession
QYS24847.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MAVLSGFPQNVTYQSVTVAQGGGSENLLINPRGKINQANESAGVLAAGQYFCDGWKAGGSGAEVYIDADGFRLVSGSILQLVPNNLESGRSIRGNMDALMGNPVISINGGSDNELSDSAQYIQFEISGNNSKFTRIVLAESVSAPIYQQLSDELKHCKRFLFVSESNQELYSALSXYSFVSYQFDEMHIPPAVTVGQLYQGSQIFQVSKNKVMFLKXGSSSTAGFTGGIKLDARP
Physico‐chemical
properties
protein length:235 AA
molecular weight: 25002,73270 Da
isoelectric point:5,19556
aromaticity:0,09442
hydropathy:-0,12446

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYS24847.1
1 235
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,5159
Central domain 151 224 75 0,0010
C-terminal 225 235 10 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-224
C-terminal
225-235

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage NO16-like 91-7-154
[NCBI] 		2863257 Viruses > Varidnaviria > Abadenavirae > Produgelaviricota > Belvinaviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYS24847.1 [NCBI]
Genbank nucleotide accession
MZ231000.1 [NCBI]
CDS location
range 5522 -> 6229
strand -
CDS
ATGGCAGTATTAAGCGGTTTTCCTCAAAACGTAACATATCAATCGGTGACAGTGGCGCAAGGCGGCGGCAGTGAGAATTTACTCATTAACCCACGTGGCAAAATCAATCAAGCAAATGAAAGCGCGGGCGTACTCGCGGCAGGGCAATATTTTTGCGACGGTTGGAAAGCGGGCGGGTCGGGCGCTGAGGTCTATATTGACGCTGATGGTTTTAGACTAGTAAGCGGTTCAATTCTTCAGTTAGTGCCGAATAACCTAGAAAGTGGTCGAAGCATTCGCGGGAATATGGATGCGCTAATGGGCAATCCGGTAATCAGCATTAACGGCGGCTCAGATAATGAATTGTCAGACAGTGCACAATACATTCAATTTGAAATTTCCGGCAATAACTCGAAATTCACGCGCATCGTTTTAGCGGAATCCGTGAGCGCTCCGATTTATCAGCAGTTATCTGATGAGCTAAAGCATTGCAAGCGATTTTTATTTGTTAGCGAAAGCAATCAAGAGCTTTATTCAGCTTTGTCTGMTTACTCATTTGTTAGTTATCAATTTGATGAAATGCACATACCGCCAGCGGTGACAGTGGGGCAGCTCTATCAAGGGTCGCAGATATTTCAAGTTTCAAAAAATAAAGTTATGTTTTTGAAGTYCGGCAGCAGCTCGACAGCGGGATTTACTGGCGGAATAAAACTGGACGCGAGGCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
20ae567a9862dd2d574fd6fc22f394f30371994750699407f7c19bb614eb5f23
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8784
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Staying below the radar: unraveling ubiquitous cryptic non-tailed vibriophages and implications for their bacterial hosts Kalatzis,P.G., Mauritzen,J., Petersen,C.S., Millard,A., Tsertou,M., Katharios,P. and Middelboe,M. 2023-02-15 — GenBank