Protein

View in Explore
Genbank accession
XOD48504.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MAIKLSNNAVSHLAAELAQGDTQIILTPGEGSMFPTLGAGDYFQATLAKASGQYEIVRATARDVDTLTVLRAQENTQALHFAADDRIELRVTAGVLNTLIDAVRQIRPKLGDIKMWSGAVANIAAVHGPGWQLADGTNGTIDLRDRFVVGAGASYAPGNTGGANTVSISAEQMPAHNHGVSDPGHIHGVSDPTHAHSVYDPGHSHNTNSNYYNIGAGGSGTATPYNGSGQFVSGGAVIAAATGIAIYGAATGISIQSHATGVSTQSAGSGAAHENRPPYFALAFIQYTGAGVIDI
Physico‐chemical
properties
protein length:295 AA
molecular weight: 30198,02290 Da
isoelectric point:5,83904
aromaticity:0,06441
hydropathy:-0,05424

Domains

Domains [InterPro]
DC_0891
STR
1–294
DC_0891
cd22641
STR
89–183
cd22641
SSF88874
STR
108–285
SSF88874
XOD48504.1
1 295
Architecture
STR
STR 1-294 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD48504.1
1 295
Domain Start End Length (AA) Confidence
N-terminal 1 275 275 0,5190
Central domain 276 284 10 0,0021
C-terminal 285 295 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-275
Central
276-284
C-terminal
285-295

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage YL2
[NCBI] 		3390402 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia pseudosolanacearum
[NCBI] 		1310165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD48504.1 [NCBI]
Genbank nucleotide accession
PQ295877.1 [NCBI]
CDS location
range 55261 -> 56148
strand +
CDS
ATGGCTATCAAGCTGTCCAACAATGCAGTGTCCCATCTTGCCGCCGAGCTGGCGCAGGGCGACACCCAAATCATCTTGACGCCGGGCGAGGGCAGCATGTTCCCGACACTCGGCGCCGGAGACTACTTCCAGGCCACGCTCGCGAAAGCATCCGGCCAATACGAGATCGTGCGTGCCACTGCGCGCGACGTCGACACGCTGACCGTGCTGCGCGCCCAGGAGAACACCCAGGCGCTGCACTTCGCCGCTGACGATCGTATTGAGCTGCGCGTCACGGCTGGGGTGTTGAATACGCTCATCGATGCGGTGCGCCAGATTCGCCCCAAGCTGGGAGACATAAAAATGTGGAGCGGCGCAGTCGCCAACATAGCCGCCGTGCATGGGCCTGGATGGCAGCTTGCCGATGGAACGAATGGGACCATTGACCTGCGGGATCGGTTCGTCGTCGGGGCGGGTGCATCCTATGCGCCAGGGAACACCGGCGGCGCCAACACCGTCTCGATTTCCGCAGAGCAGATGCCCGCTCATAATCACGGTGTCAGCGATCCGGGCCACATCCATGGAGTGAGCGACCCTACCCACGCGCACAGCGTCTATGATCCTGGTCACTCGCACAACACGAACTCGAATTACTACAACATCGGGGCGGGTGGCAGCGGTACGGCTACGCCTTACAACGGAAGCGGCCAATTCGTCTCCGGCGGCGCAGTCATCGCGGCCGCCACCGGCATCGCCATCTATGGGGCCGCTACCGGAATTTCGATTCAGAGCCACGCAACTGGCGTCAGCACTCAGAGCGCGGGCAGTGGTGCTGCGCACGAGAACCGGCCACCGTATTTCGCGCTGGCGTTCATCCAGTACACTGGCGCTGGTGTGATTGACATCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d0e531de7e2bbb9c59b48315a8cff25a074cbb426d5b1469ded7d4f39f03eb64
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8192
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of a Virulent Phage Cocktail Formula and Evaluation for Control of Tobacco Bacterial Wilt Disease He,H. 2025-03-13 — GenBank