Protein

View in Explore
Genbank accession
WYW02914.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYTLDGTKKDFTIPFEYLARKFVVVTLIGATRRELILNTEYRFTTNTTITTTKAWGPADNFDLIEIRRLTSATERLVDFADGSILRAYDLNISQVQSLHIAEEARDLTADTIGVNNDGDLDARARKIVNLADGVNDGDAVNLRQQKQWAGSALNSATASAASAAASEASRQASLAQAQASAASAAASLTYSQNSQQSAVNSFNSESNSLNYAQASQAARDLSQAWASKAEDQVVASGLYSSYHYSRKSAASATASQTSASNSANSASFSTTEANRATTQADRAKTEADKLANFNGLAGAIDSVSGNNVNWKGDQVSLSGKHISRSDVEANFTFAKADGSDTIRLVRTADRVVHLYDDAGGDRFQFGPTANVIVKNTTFNGELVANGGAVFKGGLVNNTGNFVTKGGVVGVWATSSSANSHAWFYDQSGNTRGILYARPTGQMTMVAGSSDCAQFFPDGRSAFNQITTGGIENQGRVASYRSGIGVNASMYAHCHYMAQTDDGSPPAYGFHRGGSYALALYLAGSNLNMMDSGGTDRQLVHNANLMSWIASSMTANVLGCIASMYNQSGTNLGPDGAVVGSSLRYATHNNVGTTAGAGSWRCLCSGNNGGVGNYVRFA
Physico‐chemical
properties
protein length:626 AA
molecular weight: 65976,64180 Da
isoelectric point:6,80092
aromaticity:0,08147
hydropathy:-0,30032

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0474
STR
1–622
DC_0474
WYW02914.1
1 626
Architecture
ATT
STR
ATT 1-131 | STR 132-622 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW02914.1
1 626
Domain Start End Length (AA) Confidence
N-terminal 1 263 263 0,8843
Central domain 264 462 200 0,3260
C-terminal 463 626 163 0,9498
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-263
Central
264-462
C-terminal
463-626

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Luke-2
[NCBI] 		3132650 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW02914.1 [NCBI]
Genbank nucleotide accession
PP496446.1 [NCBI]
CDS location
range 34623 -> 36503
strand +
CDS
ATGGCTACTACACCAAAGACGGTGCGGACCTACACTCTCGATGGCACCAAGAAAGACTTCACGATCCCCTTCGAGTATCTCGCTCGGAAGTTCGTTGTGGTCACCTTGATCGGTGCAACTCGACGTGAGCTGATCCTGAACACCGAGTACCGCTTCACAACCAACACGACCATCACCACGACTAAGGCATGGGGACCGGCTGACAACTTCGACCTGATCGAGATTCGCCGACTGACCTCTGCGACTGAGCGTCTGGTGGACTTCGCTGATGGTTCGATCCTTCGGGCCTACGACCTGAACATCTCGCAGGTTCAATCCCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGATACAATCGGCGTGAACAACGATGGTGACCTCGATGCCCGTGCCCGTAAGATCGTCAACCTCGCTGATGGCGTGAACGATGGTGATGCGGTCAACCTGCGCCAGCAGAAGCAATGGGCAGGCTCTGCGCTGAACTCTGCGACCGCCAGTGCTGCCTCTGCGGCTGCCTCTGAGGCGTCCCGTCAGGCTTCCTTGGCGCAGGCCCAAGCGAGCGCTGCAAGTGCTGCTGCCTCTCTGACCTACTCTCAGAACTCCCAGCAGTCTGCCGTCAACTCGTTCAACAGCGAGTCCAACTCTCTGAACTACGCCCAAGCCTCTCAGGCTGCCCGTGACTTGTCCCAAGCGTGGGCCTCGAAGGCTGAGGATCAGGTCGTTGCATCTGGTCTCTATTCGTCCTACCACTACAGCCGCAAGTCGGCAGCGAGTGCAACTGCGAGTCAGACCTCTGCGAGCAACTCTGCGAACTCTGCGAGTTTCTCGACGACTGAGGCCAACCGGGCGACCACTCAGGCTGACCGTGCGAAGACTGAGGCCGACAAGCTGGCAAACTTCAACGGACTCGCTGGTGCAATTGATTCCGTGAGCGGCAACAATGTGAACTGGAAGGGCGACCAAGTGAGCCTCTCTGGTAAGCACATCTCCCGTAGTGACGTTGAGGCCAACTTCACGTTCGCTAAGGCTGATGGGTCCGACACGATCCGACTGGTCCGTACAGCGGACAGGGTTGTGCATCTCTATGACGATGCTGGTGGCGACCGTTTCCAGTTTGGTCCTACGGCGAACGTCATCGTTAAGAACACCACCTTCAACGGTGAGCTTGTGGCGAATGGCGGGGCGGTATTCAAGGGCGGTCTGGTGAATAACACTGGCAACTTCGTGACCAAAGGCGGCGTTGTTGGTGTGTGGGCAACCTCATCCTCGGCAAACAGCCATGCGTGGTTCTACGACCAGTCCGGTAATACCCGAGGAATCCTCTATGCCCGCCCAACAGGTCAGATGACCATGGTTGCTGGCAGTTCCGATTGTGCCCAGTTCTTCCCAGATGGCCGTAGCGCTTTCAACCAAATCACAACTGGCGGGATCGAGAACCAAGGGCGTGTTGCTTCTTATCGCAGTGGTATCGGCGTGAACGCATCAATGTATGCTCACTGCCACTACATGGCCCAGACCGACGATGGCTCCCCGCCTGCTTATGGCTTCCACCGTGGTGGCTCCTACGCGCTTGCCCTGTACCTCGCTGGTTCCAACCTGAACATGATGGACTCCGGTGGCACTGACCGCCAGTTGGTACACAACGCCAACCTCATGTCGTGGATCGCATCGTCGATGACGGCTAACGTGCTCGGCTGCATTGCATCCATGTACAACCAGTCTGGCACTAACCTCGGACCGGACGGTGCCGTTGTCGGTTCGTCTCTGCGGTACGCAACGCACAACAACGTTGGGACAACTGCTGGTGCTGGGTCGTGGCGCTGCCTGTGCAGTGGTAACAACGGTGGCGTGGGTAACTACGTCCGCTTCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4d97b656724bf734782897e4610703a1646117097cd06df8b93b41dd6a3d3364
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6822
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank