Protein

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Genbank accession
QCW23022.1 [GenBank]
Protein name
putative carbohydrate-binding module
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MGVKIYADTSTGFLHFDGSRISPKPLNGVITASASNKAFRIRITRSDLLQANGNPRVMFKHLKMNRVERQDGTNLRLDLGYSRQQIIDYINTEAQKVVETGIEGVAVCIDGTVVSYAATTIDFTGSAVQSLEVTGGIATISIAQTTAVGGGSSYADSDVDTHLNVGLANTGDILTWGGSDYEWSAPSTIGAGNPVVNGSITGVGNSTLRLVLQDSNVIDIDLSTLNTTGSDDDINTRITKAVSFARTETTYLRYSVGSASNNMWDAAFRTPGSTPLGMGSAADTHVSNDGNAQPFAQTLIFRNAGINTDRDSVLVGVTDGDEADIMVPGIIHHYIGISSTKKLVHHWGEPHVLGIGTTQANRAELMDVSDDKFYGIFMDFDGQRFGTGVSTSQLNSQFRYKVVDLSSGDVTDLTPNWTHYGKSQDGNGDSRVYSRLMYGALAGTNNNNVSSASNVHLRFEGDIAQATSITYQQGAVLLDDTQVSLMVRNPEKYLRDYKVGTSSRRPYFDTTQLFKVSFANYHFQAAQVWLMGDGDYDSLGSSSEQGVRNFVRPDAYMRLNWPSYPSYTGFTTVSVTAGPSFTNTKSTNFENLDHATRNRQSGEFTNLIKTSGQTASAYTLSFWFRPGNNSHEDQNIFNAFSQYNTFEGTSIIQVMYNGNTASTRNIRFKVQDQSGGLDADNYRLDLATPVGDVTHTNGSNGFHHIAITCDGSANAYTSASLGIKIYINGVLQTLTDNSNGGGIEDVPSGGETFSIAPNKIALGRQPTNARYMRDSKVDELSFFNTELNATEVACLYNGGTPSNLANFIPGPAHWYRMGDGDSAPTLADSIGNADLSMTNMSDANFVTIVPS
Physico‐chemical
properties
protein length:851 AA
molecular weight: 91856,12000 Da
isoelectric point:5,10428
aromaticity:0,09048
hydropathy:-0,33173

Domains

Domains [InterPro]
DC_1726
STR
34–570
DC_1726 G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
568–797
G3DSA:2.60.120.200
IPR013320
STR
613–799
IPR013320
PF13385
LEC
614–793
PF13385
QCW23022.1
1 851
Architecture
STR
STR 34-799 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCW23022.1
1 851
Domain Start End Length (AA) Confidence
N-terminal 1 454 454 0,1849
Central domain 455 653 200 0,3392
C-terminal 654 851 197 0,9069
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-454
Central
455-653
C-terminal
654-851

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B05
[NCBI] 		2484637 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW23022.1 [NCBI]
Genbank nucleotide accession
MK799832 [NCBI]
CDS location
range 164416 -> 166971
strand +
CDS
ATGGGAGTTAAAATTTACGCAGATACAAGTACTGGATTCCTCCACTTTGATGGTAGTAGAATCTCACCCAAACCACTGAATGGTGTTATTACAGCTTCTGCATCTAATAAAGCATTTAGAATTAGAATCACAAGAAGTGACCTTCTTCAAGCAAATGGTAACCCTAGGGTTATGTTCAAGCACCTGAAGATGAATAGGGTTGAAAGACAAGATGGTACAAATCTTCGTCTTGATCTTGGATATAGCAGACAACAAATTATTGATTATATCAATACTGAAGCACAGAAGGTTGTTGAGACTGGTATTGAAGGTGTTGCAGTATGTATTGATGGTACTGTTGTATCTTATGCTGCAACTACAATTGACTTTACTGGTAGTGCAGTTCAATCTCTTGAGGTAACTGGTGGTATTGCTACGATTTCTATTGCACAAACCACTGCTGTTGGTGGTGGTAGTTCATATGCAGATAGTGATGTAGATACTCATCTCAATGTTGGTCTTGCAAACACTGGTGATATTCTTACTTGGGGTGGTTCTGACTATGAGTGGAGTGCTCCTTCCACTATTGGAGCAGGTAATCCTGTAGTTAATGGTTCTATCACTGGTGTAGGTAACAGTACTCTACGTCTCGTACTACAAGATTCTAATGTTATTGATATTGATTTAAGTACTCTGAACACCACTGGTTCTGATGATGACATCAACACTAGGATTACCAAGGCAGTATCTTTTGCAAGAACTGAAACCACTTACTTGAGATATTCAGTAGGTAGTGCATCCAATAATATGTGGGATGCTGCATTCAGGACACCTGGTAGCACTCCATTGGGTATGGGATCAGCAGCAGATACTCATGTTTCTAATGATGGTAATGCACAACCCTTCGCACAAACTCTTATCTTCAGAAACGCAGGTATCAATACTGATAGAGACAGTGTTCTAGTTGGAGTTACTGATGGTGATGAAGCGGATATCATGGTTCCTGGTATAATTCATCATTATATTGGTATTAGTTCTACCAAGAAACTTGTTCATCACTGGGGTGAACCACACGTCCTAGGTATTGGCACTACTCAGGCTAACAGAGCAGAGTTGATGGATGTAAGTGATGATAAATTCTATGGTATCTTTATGGACTTTGATGGACAGAGATTTGGTACTGGTGTTTCCACATCTCAACTGAATAGTCAGTTTAGATATAAAGTGGTTGATCTTTCAAGTGGAGATGTTACTGACTTAACACCAAACTGGACACACTATGGTAAGAGTCAGGATGGTAATGGTGATTCGCGAGTGTATTCAAGATTAATGTATGGTGCTCTTGCTGGTACAAATAATAATAATGTATCATCAGCATCAAATGTACATTTAAGATTTGAGGGTGATATTGCACAGGCAACTAGTATAACCTATCAACAGGGAGCAGTTTTGCTTGATGATACACAGGTAAGTTTGATGGTTCGTAACCCCGAGAAGTATCTCAGAGACTATAAGGTTGGTACTTCATCTAGAAGACCTTACTTTGATACTACTCAACTCTTCAAAGTGAGTTTTGCAAACTACCATTTCCAAGCAGCACAAGTTTGGCTAATGGGTGATGGTGATTATGATTCACTTGGTTCTTCTAGTGAACAGGGTGTCAGAAATTTTGTAAGACCAGACGCATATATGAGACTGAATTGGCCCAGTTATCCATCTTATACTGGATTCACAACTGTGAGTGTTACCGCTGGTCCTTCCTTTACGAATACAAAATCAACTAATTTTGAGAACCTGGATCATGCTACCAGGAATCGTCAAAGTGGTGAGTTCACTAACTTGATTAAGACATCTGGTCAGACGGCATCTGCATACACTCTGAGTTTCTGGTTCAGACCAGGTAACAACTCTCATGAGGATCAAAACATCTTTAACGCTTTTAGTCAATACAATACATTTGAGGGTACAAGTATCATCCAAGTGATGTACAATGGTAATACAGCATCAACTAGAAACATTAGATTCAAGGTTCAGGATCAGTCTGGTGGACTTGATGCAGATAATTACAGACTTGACTTAGCTACACCTGTTGGTGATGTGACTCACACCAATGGTAGTAATGGTTTCCATCATATTGCTATCACCTGTGATGGTTCTGCTAATGCATATACATCAGCAAGTCTTGGCATCAAGATCTATATCAATGGTGTACTCCAAACACTGACTGATAATAGTAATGGTGGTGGTATTGAAGATGTTCCATCTGGTGGTGAGACTTTCTCTATTGCTCCAAATAAAATCGCACTTGGAAGACAACCAACCAATGCAAGATATATGAGAGATTCAAAGGTTGATGAACTCTCATTCTTCAATACAGAACTCAATGCAACTGAAGTCGCTTGTCTGTATAATGGTGGTACTCCATCCAATCTTGCTAACTTCATTCCAGGACCAGCACACTGGTACAGAATGGGTGATGGTGATTCAGCACCAACTCTTGCAGATAGTATCGGTAACGCAGACCTGTCTATGACGAATATGTCTGACGCCAACTTTGTGACTATAGTTCCTTCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
10431ea7a48d6b11e5c2bb001a03d1aa1c13f45c548a0c5c574e4aba78cbf49a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2898
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-B05 from the Bohai Sea, China Jiang,T. 2020-10 — GenBank