Protein

View in Explore
Genbank accession
WCZ56628.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MTIIYDVTGHKGGGSKQHTPQETPDSLHSLAKIRILLALGEGEFESITSASELRQRVYLDGTPIQNADLSENFPGARVEFRPGTQHQDVIHGFSAVESEQSVGVKLENGTPWVRQINDTSLDAVRVRIGIPALYTSEDNGDLVGGRIDYKIVVYTDNADPREFTFAAVGKTMSLYERDHRIELPPNVNTGWRVEVHRITADSTSAKVVNDIQVQSITEIIDARLRYPLTALLFVEFDAKAFQNIPRVSIKCKGRKVLIPNNYDPINHTYSGDWDGTFKRAWTDNPAWHWYDICITERFGLGRRIKPQMLNRYALYQIAQRCDQLVSDGNGGREIRFKNDMYIQSQTDAWTVLKDLAAIFAGMTWWGNQMLNIVSDQPVAAVSHTITNASVIDGRFDYASGSQKTRYSTFAVAYGNPKNHYDDAIATGQRVELVRRHKINRLDITAIGCTRESEAQRRGHWALISNQLDQQVSFKVGMEGLFFIPGSVVAIADTNISGGFETRGGRLLSDPGTRTVLNTDSEITFRPGDKFLVRTDSGNVETREIASVNGNKVTLKTALDADPIPDQPFCVDGDDIQLQKFRITDLEYDDSTSTFSVRGIEYNDSKYDAVDNGARLDPGIFTQVPDGVMKGPESVTITPSQISSQGQLITNVDIVFPPVKDAVVYEIQWRRTSLQNMAIQWGNDWVNIPRTASNGAHIPNVFSGNYQARVRAIGMGEISSPWVSSPITPIEGRLGGLNAPIITNAISGLHQILWKWNHNNAATDISYTELEVRKTGETEWRFLSNVPYPGAEYAQTSLEFGIYQQLRARVADKIGNLSDWSAPFEGQVSDKVDEYMKGLDDEFLTSEDGKRFQEAIDTIPQGIYEAMLTDAQQLFNARAEYKGIYAEIKVAYNVAADAHKAVAQLETLIGTRLDDAEAAVNTLQTAQSTHEQAFAQYQQTVAAKFGDQEAAIQQVQTATSTNAQALADYKVHVAAQFDQQSAAIEQKMTSTFNHAGGNATYSLKAGVTYNGTYYDAGMQLSVVAEGGAVKSRIAFKADQFYIMHPSNGSLSSAFIVDGGAVYIDTARIKDATINFAQITDTLQSNNYDGYSRGWRLGKDGTFINLGTGNGGGMKQTNTQISVRDGNGVLRVQIGEITGYW
Physico‐chemical
properties
protein length:1139 AA
molecular weight: 125878,95140 Da
isoelectric point:5,31220
aromaticity:0,09131
hydropathy:-0,37612

Domains

Domains [InterPro]
DC_0014
STR
1–1139
DC_0014
IPR053171
Unmapped
7–857
IPR053171 IPR015406
IPR055385
ATT
96–222
IPR055385 IPR032876
WCZ56628.1
1 1139
Architecture
STR
ATT
STR
ATT
STR
STR 1-95 | ATT 96-222 | STR 223-343 | ATT 344-495 | STR 496-1139
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCZ56628.1
1 1139
Domain Start End Length (AA) Confidence
N-terminal 1 513 513 0,9130
Central domain 514 1079 567 0,0367
C-terminal 1080 1139 59 0,8903
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-513
Central
514-1079
C-terminal
1080-1139

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Kenya-K19
[NCBI] 		3027607 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCZ56628.1 [NCBI]
Genbank nucleotide accession
OQ291023.1 [NCBI]
CDS location
range 17241 -> 20660
strand +
CDS
ATGACGATTATCTACGACGTCACTGGGCACAAAGGCGGCGGCAGCAAACAGCACACCCCACAGGAGACGCCCGATAGCCTGCATTCGCTGGCTAAAATCCGCATCTTGCTCGCACTGGGCGAAGGGGAATTCGAAAGTATTACCAGCGCCAGCGAATTGCGCCAGCGTGTATATCTGGATGGAACACCGATCCAGAATGCTGACCTGTCCGAAAACTTCCCCGGCGCTCGTGTGGAGTTCCGCCCCGGAACCCAGCACCAGGATGTGATCCACGGATTTTCGGCGGTGGAAAGTGAGCAATCCGTAGGTGTAAAACTGGAAAACGGCACGCCGTGGGTGCGCCAGATTAACGATACCAGTCTTGACGCCGTGCGCGTTCGCATCGGCATACCCGCCCTGTACACCAGCGAAGATAATGGCGACCTGGTGGGCGGGCGCATCGACTATAAGATCGTTGTGTATACGGATAACGCCGACCCGCGTGAGTTTACCTTCGCTGCCGTTGGTAAAACAATGTCGTTATACGAGCGCGATCACCGCATCGAGCTACCGCCGAACGTTAACACCGGCTGGCGCGTGGAGGTGCACCGCATAACGGCAGACTCCACATCGGCAAAAGTGGTTAACGATATCCAGGTGCAATCTATTACTGAGATTATCGACGCCCGTCTTCGCTACCCGCTAACCGCGCTGTTGTTCGTGGAGTTCGACGCTAAAGCGTTCCAGAACATCCCGCGCGTGTCCATCAAGTGCAAAGGCCGCAAAGTGCTAATACCGAACAACTACGACCCGATCAATCATACCTATTCGGGGGACTGGGACGGCACATTCAAACGCGCGTGGACGGATAACCCTGCGTGGCACTGGTACGATATCTGTATTACGGAACGATTCGGCCTCGGGCGGCGTATCAAACCGCAAATGCTTAACCGGTACGCGCTCTACCAGATTGCGCAGCGCTGCGATCAGCTGGTTAGCGACGGAAACGGCGGTCGAGAAATCCGCTTTAAGAATGATATGTACATTCAGTCGCAGACGGATGCCTGGACCGTGCTTAAGGATTTAGCAGCTATCTTTGCCGGTATGACCTGGTGGGGCAACCAGATGTTAAATATCGTCAGCGACCAACCGGTCGCCGCAGTGTCACACACTATCACCAACGCCTCGGTTATTGATGGTCGATTCGACTACGCATCTGGCAGCCAGAAAACTCGATATTCAACTTTCGCGGTCGCATACGGCAACCCGAAAAACCACTATGATGACGCTATCGCAACGGGCCAGCGCGTCGAACTAGTGCGCCGCCATAAGATTAACCGTCTTGATATAACGGCGATCGGCTGTACGCGCGAATCCGAAGCGCAACGCCGCGGACACTGGGCGCTAATCTCCAACCAGTTGGACCAGCAAGTTAGTTTTAAGGTTGGCATGGAGGGGTTATTCTTTATCCCCGGTAGCGTAGTCGCGATCGCGGATACTAATATTTCTGGCGGATTCGAGACTCGCGGCGGTCGCCTGTTGTCAGACCCTGGCACGCGTACCGTGCTTAACACAGACAGCGAAATCACATTCCGCCCTGGTGATAAGTTCTTGGTGCGCACCGATAGCGGAAATGTGGAGACTCGCGAGATCGCCAGCGTCAACGGCAACAAGGTCACGCTAAAAACCGCACTGGATGCCGACCCGATTCCAGACCAGCCGTTTTGCGTTGATGGCGACGATATCCAGTTGCAAAAATTCCGCATCACCGATCTGGAGTATGACGACTCTACGAGCACTTTCTCGGTGCGCGGGATTGAATACAACGATAGCAAGTATGATGCCGTTGATAATGGCGCTCGCCTTGATCCTGGTATCTTTACGCAAGTGCCAGACGGTGTGATGAAGGGGCCGGAATCCGTTACCATCACCCCGTCGCAGATCTCATCGCAAGGCCAGCTAATCACCAACGTGGATATTGTTTTCCCGCCGGTGAAAGATGCCGTGGTGTATGAAATCCAGTGGAGGCGTACTAGCCTGCAGAATATGGCGATCCAGTGGGGTAACGACTGGGTGAATATCCCGCGCACGGCGTCGAATGGTGCGCACATCCCTAACGTGTTCTCCGGCAACTACCAGGCGCGCGTCCGTGCGATCGGTATGGGCGAAATCTCGTCCCCGTGGGTATCGTCCCCCATCACGCCGATCGAAGGTCGCCTCGGTGGGCTTAATGCGCCAATCATCACCAACGCGATTTCAGGTTTGCATCAGATTCTATGGAAGTGGAATCACAACAACGCTGCGACTGATATCTCATACACCGAGCTTGAGGTGCGCAAGACGGGTGAAACGGAATGGAGATTCCTGTCCAACGTCCCATACCCTGGGGCGGAGTATGCGCAAACGTCGCTGGAGTTCGGAATTTACCAGCAGTTGCGCGCCCGTGTAGCGGATAAAATCGGCAACCTGTCGGACTGGTCGGCCCCGTTTGAAGGGCAGGTGAGTGACAAAGTTGACGAGTACATGAAGGGGCTTGATGACGAGTTCTTGACTTCCGAGGATGGTAAACGCTTCCAGGAAGCAATCGACACGATCCCGCAGGGTATTTACGAGGCGATGCTCACCGACGCGCAGCAATTGTTCAACGCCCGCGCCGAGTACAAAGGCATTTATGCGGAAATCAAGGTGGCGTATAACGTGGCGGCGGACGCCCACAAGGCGGTCGCTCAACTGGAGACGTTGATCGGCACGCGACTTGACGATGCGGAAGCGGCGGTCAACACGCTGCAGACAGCGCAAAGCACGCACGAGCAAGCCTTCGCCCAGTACCAGCAAACTGTTGCCGCTAAGTTCGGGGACCAGGAAGCCGCCATCCAGCAGGTACAAACGGCAACGAGCACCAATGCTCAGGCGCTGGCGGATTATAAAGTCCACGTAGCAGCGCAGTTTGACCAACAGTCCGCAGCTATCGAGCAGAAGATGACGTCCACGTTTAACCATGCTGGTGGCAACGCCACGTACAGCCTTAAGGCGGGCGTGACGTATAACGGGACTTACTATGATGCCGGTATGCAGCTTTCCGTCGTGGCGGAAGGCGGCGCGGTTAAATCCCGCATAGCATTCAAAGCGGACCAGTTCTACATCATGCACCCATCTAACGGGTCGCTTTCGTCCGCGTTTATCGTAGACGGCGGCGCGGTGTATATTGACACGGCACGCATCAAAGACGCGACTATCAATTTCGCGCAGATCACGGACACATTGCAATCGAATAACTATGACGGTTACTCGCGTGGTTGGCGCTTAGGGAAAGACGGAACGTTTATCAACCTGGGAACCGGTAACGGTGGCGGGATGAAACAGACAAACACGCAAATCAGCGTTAGGGACGGAAACGGCGTGCTCCGCGTGCAAATTGGTGAAATCACAGGTTATTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fbfaffcd44b59b9d4bf388e67d23285a1e80ef0e3f86df5e1404e1dde0e7e2fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7837
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence of Salmonella phage Kenya-K19 Gunathilake,D., Makumi,A., Loignon,S., Trembley,D., Labrie,S., Svitek,N. and Moineau,S. 2024-01-11 — GenBank