Protein

View in Explore
Genbank accession
YP_004322196.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,81
Protein sequence
MAFRTNATEKVRIKSDGDVGIGTADPQVKLHIRDADPYIRLEDSAAPTGYSQIMGTHQGAIAFSADTSDSVADSHLRFDVDGSEKLRITSAGRIGIGTAEPDRLLVVAGSDPIIRSEDTDTGNTYAEFKQLAGSLFIDSRNDSSDGTIIFRGVGGGSATEKLRITSGGNVDINGTPPWTVTGAGYRNLSISGNDASSSGFLWLGNGAAATNADFDLGRVNFVNGANIVAQIKGSTQTSANDDGRIAFFTKATGSNISEKLRITSDGRFKIGTISDYSSDVTNAPVYIAMQSDITGVGDDEGGATAGMVRIEETGSNDGRFHGIELRNKNAGDIRLFNLDRSTADRGDLILVMPDEDANDGTHLKMRVNSLKSSIQISGKGGAVAGNQQQNHTDIYIATKTGVTAVDTGVGNEIAGIIRFEDIGSNDNRFHGIEIRNKNSGDVRILNKDEGTTNKASLVFAIDNGGIEEAMRIDSAGRLLSGLTSFSAGTAAAFGGNSSVADGNGVIFITRGHSNAMSAGDGIGNIEFGNSTGNVFARISAEAGAATGAGGSNDYPGQLKFWTTADGGSSPTQAAIINKDGSVGINETSPSATVDINNGSRTHTFLELQGSDNTALGFFLTHTSTSYTGDGMKVHHNRAGTSAMNFLVCDSDHSGTPDRQFTLRGDGNAFADGTWSPNGADYAEYFESSTGAAIPVGTTVVLENNKVRAATSEDSASSIMGVVRPKAPGKIASVIGNSAWNKWSNKYLTDDFDRFILDEHLVYEWTETGEDGQEINHSYESHQIPEGVTIPSDVVGQTHDSKGNRFVHYRLNPDFDPSVTYVPREERDEWIIVGLIGQVKILDGQPMNDRWVKMRDVSDSVEEWFIR
Physico‐chemical
properties
protein length:866 AA
molecular weight: 91886,55070 Da
isoelectric point:4,83009
aromaticity:0,07044
hydropathy:-0,39203

Domains

Domains [InterPro]
DC_1386
STR
30–170
DC_1386 DC_1815 IPR021865
IPR021865
CHP
661–840
IPR021865
G3DSA:2.40.300.10
RBD
680–793
G3DSA:2.40.300.10
YP_004322196.1
1 866
Architecture
STR
CHP
RBD
CHP
STR 30-356 | CHP 650-679 | RBD 680-793 | CHP 794-840 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004322196.1
1 866
Domain Start End Length (AA) Confidence
N-terminal 1 731 731 0,0022
Central domain 732 855 125 0,0716
C-terminal 856 866 10 0,2425
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-731
Central
732-855
C-terminal
856-866

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SM2
[NCBI] 		444860 Uroviricota > Caudoviricetes > Pantevenvirales > Nilusvirus > Nilusvirus ssm2
Host Synechococcus sp. WH 8017
[NCBI] 		166321 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004322196.1 [NCBI]
Genbank nucleotide accession
NC_015279 [NCBI]
CDS location
range 40065 -> 42665
strand +
CDS
ATGGCATTCAGAACCAATGCCACTGAAAAAGTTCGTATAAAATCTGATGGTGATGTCGGCATCGGAACCGCCGATCCACAAGTAAAGTTACACATTAGAGATGCAGATCCATACATAAGACTTGAAGATAGTGCAGCTCCAACTGGGTATTCTCAAATTATGGGAACTCATCAAGGAGCAATTGCATTTAGTGCTGATACATCAGATAGTGTTGCTGATAGTCATTTACGATTTGATGTTGATGGATCAGAAAAACTTCGTATAACTTCTGCTGGTCGAATCGGTATTGGAACTGCTGAACCAGATAGATTGCTTGTTGTTGCTGGTTCTGATCCAATTATTAGATCAGAAGATACAGATACTGGAAATACTTATGCAGAATTCAAGCAACTTGCTGGATCTCTTTTCATTGATAGTAGAAATGATTCCAGTGATGGAACAATAATTTTCCGTGGTGTTGGTGGTGGTTCTGCAACAGAAAAACTTCGTATAACTTCTGGTGGTAATGTAGATATTAATGGAACACCACCTTGGACTGTAACTGGTGCAGGTTATAGAAATCTTTCTATATCAGGCAATGATGCATCATCTTCTGGTTTCCTTTGGTTAGGAAATGGTGCTGCTGCTACTAATGCAGATTTTGACTTAGGCAGAGTCAATTTTGTTAATGGTGCAAATATAGTTGCTCAGATTAAAGGCAGCACACAAACAAGTGCTAATGATGACGGAAGAATTGCTTTCTTCACAAAAGCAACTGGAAGTAATATATCAGAAAAACTTCGTATAACTTCTGATGGTCGTTTTAAAATTGGAACAATTTCAGATTATTCTTCTGATGTCACAAATGCACCAGTCTACATCGCTATGCAGTCGGATATAACCGGCGTTGGTGATGATGAGGGAGGCGCTACTGCTGGAATGGTGAGGATTGAAGAAACTGGTTCAAATGATGGTAGATTTCATGGAATTGAATTAAGAAATAAAAATGCTGGTGATATTAGATTATTCAATCTGGATCGATCTACTGCTGATAGAGGTGATCTTATTCTTGTAATGCCTGATGAAGATGCCAATGATGGAACTCATCTGAAGATGAGAGTAAATTCTCTGAAGAGTTCAATCCAAATTTCAGGTAAAGGTGGTGCTGTTGCTGGTAATCAACAACAAAATCACACTGACATCTACATTGCAACCAAGACTGGAGTAACTGCTGTAGATACGGGAGTAGGTAATGAAATCGCTGGTATTATTAGATTTGAAGATATAGGATCTAATGATAACAGATTTCATGGAATTGAAATAAGAAATAAAAATTCTGGTGATGTCAGAATCCTGAATAAAGATGAGGGAACAACCAATAAAGCAAGTCTGGTATTTGCCATTGATAATGGTGGTATTGAAGAGGCAATGCGTATAGATTCTGCTGGAAGACTTCTGAGTGGTCTAACATCTTTTAGTGCAGGAACGGCCGCTGCTTTTGGAGGTAACAGTTCAGTAGCAGACGGTAATGGTGTCATATTTATTACCAGAGGGCATAGTAATGCGATGAGTGCTGGCGACGGTATCGGAAATATTGAATTTGGTAATAGTACTGGCAATGTTTTTGCGAGAATTAGTGCAGAGGCTGGAGCAGCGACGGGAGCTGGTGGAAGTAATGATTATCCAGGACAACTTAAGTTCTGGACAACGGCGGATGGCGGATCTTCGCCAACTCAGGCAGCTATAATTAATAAAGATGGTAGTGTTGGTATAAATGAAACAAGTCCATCTGCGACTGTTGATATTAATAACGGATCTCGTACTCATACATTTCTTGAACTTCAAGGTTCCGATAACACTGCTTTAGGATTTTTCCTTACTCATACCAGCACAAGTTATACTGGTGATGGTATGAAAGTGCACCACAACAGAGCTGGAACTTCTGCCATGAACTTCTTGGTCTGCGACTCCGACCATAGTGGCACCCCTGACCGCCAATTTACTTTAAGAGGTGATGGCAATGCTTTTGCAGACGGCACTTGGAGCCCCAACGGTGCTGACTATGCTGAATACTTTGAATCAAGCACAGGTGCTGCAATTCCTGTCGGTACAACTGTTGTCTTAGAAAACAACAAAGTTCGTGCAGCAACATCTGAAGATTCTGCATCATCAATTATGGGTGTTGTGCGACCTAAAGCACCCGGCAAAATCGCAAGTGTTATTGGTAATTCTGCTTGGAACAAATGGTCAAATAAGTATCTTACGGACGATTTTGATCGGTTCATTCTTGACGAACATCTTGTTTATGAATGGACAGAAACCGGAGAAGATGGTCAAGAAATTAACCATAGTTACGAGTCACATCAGATTCCTGAAGGTGTAACGATTCCAAGTGATGTTGTTGGTCAAACCCACGATTCAAAAGGCAATCGTTTTGTTCATTATCGTCTCAATCCAGATTTTGATCCTTCTGTGACCTATGTTCCAAGAGAAGAAAGAGATGAGTGGATTATCGTTGGTTTGATTGGACAGGTTAAAATCTTAGATGGCCAACCAATGAATGATCGTTGGGTCAAGATGCGTGATGTTAGCGACTCTGTTGAGGAGTGGTTCATCCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85523ede53af72755119fa5f839b2b664e29ebef1cf874182bf1376c15ce0026
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5964
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8017-1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank