Protein

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UniProt accession
A0A8S5P897 [UniProt]
Protein name
Pectate lyase A
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MSYSRIIHDGLYTAPTFNLGGDCIQVWGSDGDTLIQDCIFDLSAVPLADQDEAIDCIKGAHVVIERCAFIGCKKAILGGNGDYPAEDQAGGCLILRNCAFVRCGRRCPEVQDGVIADMSQCWVHDWGVGCFDVRTFGAWAHNAACLTATNCVFSRSHSLSRKDWIVDHLNHLGEAYNDGGIRDIFSRPSWVSGQRRGIDFTGYGAGGSSGCRFVNCLQIGGGQESEGNPSLDWLRDLPDTSHTSLGMTLWEYARKELSLE
Physico‐chemical
properties
protein length:260 AA
molecular weight: 28350,48770 Da
isoelectric point:5,01010
aromaticity:0,09231
hydropathy:-0,15423

Domains

Domains [InterPro]
IPR012334
STR
5–187
IPR012334
IPR011050
STR
13–157
IPR011050
IPR011050
STR
13–155
IPR011050
A0A8S5P897
1 260
Architecture
STR
STR 5-187 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5P897
1 260
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0253
Central domain 11 249 240 0,9851
C-terminal 250 260 10 0,5903
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-249
C-terminal
250-260

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ct8Hx23
[NCBI] 		2825360 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE02912.1 [NCBI]
Genbank nucleotide accession
BK015355 [NCBI]
CDS location
range 11258 -> 12040
strand +
CDS
ATGAGCTACAGCAGAATCATTCATGACGGCCTCTACACGGCCCCCACGTTCAACTTGGGCGGCGACTGCATCCAAGTCTGGGGAAGTGACGGCGACACACTGATCCAGGACTGCATCTTCGACCTCTCCGCCGTCCCGCTCGCTGACCAGGATGAGGCTATCGACTGCATCAAGGGCGCCCATGTGGTCATCGAACGTTGCGCCTTCATCGGCTGCAAGAAAGCGATCCTCGGGGGCAACGGGGACTACCCGGCAGAGGATCAGGCCGGGGGGTGCCTTATCCTCCGGAACTGCGCCTTCGTTAGGTGCGGGAGGCGGTGCCCTGAGGTGCAGGACGGCGTTATCGCCGATATGAGCCAGTGCTGGGTGCACGACTGGGGCGTGGGATGTTTTGATGTCCGCACCTTTGGAGCATGGGCCCATAACGCAGCCTGCCTGACTGCCACAAATTGCGTCTTCTCGCGTTCTCACAGCCTTTCCCGCAAAGACTGGATTGTGGATCACCTCAATCACCTGGGCGAAGCCTATAACGATGGCGGCATCAGAGACATCTTCTCCCGTCCCTCATGGGTGAGCGGGCAGAGGAGGGGAATAGATTTCACTGGATACGGCGCCGGCGGAAGCAGCGGATGCCGGTTTGTAAATTGCCTGCAGATAGGCGGCGGGCAGGAGAGCGAGGGTAATCCGTCCCTGGACTGGCTGAGAGATCTCCCTGACACGTCGCATACATCTCTGGGTATGACGCTCTGGGAGTATGCCAGGAAGGAGCTGAGCCTTGAGTGA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
8480b999547dc6be60f8a558a2e14735e1bc3540063b59d2f759fd2fe7f88ad7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9488
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50