Protein

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Genbank accession
YP_010667118.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MPAGTIALTINSKTVTGSGTAFTTELKVNDFVVAVVGGVTYTLGVAAIASNTSLTLNTAFGGPTTSGLAWTAVPNQVLVGITAQVASDTARAIRGLNYDKDNWQKIYSDVASVTIQRPDGSMFTGPSWGYMANQYANKASLVNGAVPVSQGGTGGTSAASARSGLGLGSASTSNVQASASDNTAGAVLTVGAFGLGGNSPPGAANASALFTTGFHAAGGASATNFFDNYSPLIMVHRTPTAGAQIQPTTSGRLAVRGTGGSSWTAWNEMWSTGNTTVDTNNFIKKASPIARLTNDVGEMQNDFAVDEQHIISGLVSVNAEAEGVSAEKAATGVYVVKGASGMADEGWTLEVPQDINGNRLCFVELATDREGVITVSVFKRRFDVDSAMIVAGEPMDIPDGRWIDLRLQMPEDSAWNTRMREIEQSAEGEQ
Physico‐chemical
properties
protein length:430 AA
molecular weight: 44482,90640 Da
isoelectric point:4,75347
aromaticity:0,06977
hydropathy:-0,05837

Domains

Domains [InterPro]
DC_0709
STR
1–430
DC_0709
IPR058008
RBD
274–411
IPR058008
YP_010667118.1
1 430
Architecture
STR
STR 1-430
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage Midgardsormr38
[NCBI] 		2663326 Uroviricota > Caudoviricetes > Midgardsormrvirus >
Host Erwinia persicina
[NCBI] 		55211 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010667118.1 [NCBI]
Genbank nucleotide accession
NC_070949.1 [NCBI]
CDS location
range 24374 -> 25666
strand +
CDS
ATGCCAGCAGGCACTATTGCTTTAACTATCAATTCAAAAACAGTCACCGGCAGTGGCACAGCGTTCACCACTGAATTAAAGGTCAATGACTTCGTTGTGGCCGTAGTCGGCGGCGTGACTTACACGCTGGGCGTTGCCGCCATCGCGTCGAATACCTCGCTGACCCTTAACACAGCGTTCGGCGGCCCGACAACTTCAGGACTCGCTTGGACAGCCGTACCGAATCAGGTATTAGTCGGCATCACGGCGCAGGTAGCTTCTGATACCGCAAGGGCGATCAGAGGTCTGAATTATGACAAGGACAACTGGCAGAAGATTTATAGCGATGTGGCGTCTGTAACCATCCAGCGCCCGGATGGCAGCATGTTCACAGGCCCAAGTTGGGGCTACATGGCAAACCAGTACGCGAACAAGGCATCTCTTGTTAACGGCGCGGTCCCTGTATCTCAGGGTGGGACGGGTGGCACCAGCGCTGCTTCTGCGCGCAGCGGATTAGGTCTTGGCTCGGCATCAACGAGCAATGTTCAGGCATCGGCATCCGACAACACGGCTGGAGCGGTGCTGACCGTAGGAGCTTTTGGCCTTGGGGGTAATTCACCGCCAGGTGCAGCGAACGCAAGCGCCTTATTCACCACTGGCTTTCATGCCGCAGGCGGGGCATCGGCGACAAACTTTTTCGATAACTACAGCCCACTGATTATGGTACACCGAACTCCAACTGCAGGGGCGCAAATTCAGCCTACAACCAGTGGGCGGCTGGCTGTCAGAGGTACAGGTGGAAGCAGTTGGACAGCATGGAATGAAATGTGGTCCACCGGAAACACCACGGTCGATACCAACAACTTTATCAAAAAAGCTTCGCCTATCGCTCGCCTAACGAATGATGTAGGTGAGATGCAGAATGATTTTGCGGTAGACGAACAGCATATCATTTCAGGGCTGGTCTCAGTAAACGCTGAGGCAGAAGGGGTGAGTGCGGAGAAGGCAGCAACAGGCGTGTATGTGGTTAAGGGCGCTTCGGGTATGGCAGATGAAGGTTGGACGCTGGAGGTGCCGCAGGATATCAACGGCAATCGCCTGTGCTTCGTTGAGTTGGCCACAGACAGAGAAGGAGTTATAACGGTGTCGGTGTTTAAGCGCCGCTTTGACGTCGACAGCGCGATGATTGTAGCCGGTGAGCCGATGGATATACCAGATGGTCGCTGGATTGACCTGCGCCTACAGATGCCTGAAGACTCAGCCTGGAACACTCGCATGCGAGAAATTGAGCAGTCAGCAGAGGGCGAGCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d110ff8a0201aa2889cc767eacb0315ceae15761ba08b019bc2b12a95eadd1e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8585
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage Midgardsormr38 Dislers,A., Zrelovs,N. and Kazaks,A. 2020-06-19 — GenBank