Protein

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Genbank accession
XJW12929.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,68
Protein sequence
MPNSPVNTNDLYGQYSENRQFIDVPMYTEEAKNAAIAAQAAAAAAQGFSITAENAKNQAVAAGNVLENMVAVATTVGPSLPATADWDKSNGIMTFEIPQGTQGIPGYNGNTLYELGDMTANESFNFHNGSVFTGTLQSSVTTVQFLGVDALTDRASQSIVILKQGTGSNLVTWPNNIKWPNDLPPTMSYQQGDSDMFAFLTVDGGVTWLGFMSTGGF
Physico‐chemical
properties
protein length:217 AA
molecular weight: 23011,23620 Da
isoelectric point:4,09243
aromaticity:0,09677
hydropathy:-0,14839

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Photobacterium phage PhCF1.2
[NCBI] 		3376961 Viruses >
Host Photobacterium ganghwense
[NCBI] 		320778 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJW12929.1 [NCBI]
Genbank nucleotide accession
PQ521129.1 [NCBI]
CDS location
range 39732 -> 40385
strand -
CDS
ATGCCAAATTCACCAGTAAATACTAATGACCTATATGGTCAGTACAGTGAGAACCGTCAGTTTATTGATGTTCCTATGTACACAGAAGAAGCTAAGAACGCAGCTATTGCAGCTCAGGCAGCAGCAGCGGCAGCCCAAGGCTTCTCTATTACAGCAGAGAATGCTAAGAACCAAGCTGTAGCAGCAGGCAACGTGTTGGAGAATATGGTTGCTGTGGCTACTACAGTTGGCCCATCTCTCCCAGCTACAGCAGATTGGGATAAATCAAACGGCATTATGACCTTTGAGATTCCTCAAGGCACACAAGGCATCCCAGGATATAACGGTAACACGTTGTATGAACTAGGAGATATGACAGCTAATGAAAGTTTTAACTTCCACAATGGCAGTGTGTTCACAGGCACTCTGCAAAGCTCTGTCACTACGGTACAGTTCCTTGGTGTTGATGCTCTTACTGATAGGGCTTCCCAATCAATTGTCATCTTAAAACAAGGCACAGGCTCTAACTTAGTTACATGGCCTAACAACATTAAATGGCCTAATGACTTACCACCAACAATGTCATACCAACAAGGAGATAGCGATATGTTCGCATTCCTAACGGTAGATGGTGGTGTTACATGGCTAGGATTCATGAGCACTGGAGGTTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6f221fbd6e370e66c9b954bba6649e0f83ef3027ca159560ec86c50c4114fa49
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8739
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic insights into PhCF1.2: A novel lytic bacteriophage targetting Photobacterium ganghwense Keerthi Babu,R., Sobhana,K.S., Aleena,A., Neethu,K.P., Jayasree,V.S., Grinson,G. and Gopalakrishnan,A. 2020-12-31 — GenBank