Protein

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Genbank accession
AGO49141.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKNFIYLVLLFFSVASYGQAKEVTIYTKRIVETPEQISNKINSLTGEQRIDASAIKNLPELADGSVNYGKLSEDVLGRLNPIDFTISENIKNLHTSSDPAGPNESNIINAWVDASNVSIASTSADSYLGDLSIIATKINSGSGVVYSPNYTVDTGKTYIFKCRVKVGGGFVSGSNMYLSDKTGAFVQSFINEADLGWQELTQTLSFSKTRTRVNISLSAQPVGATLLIDSFELYEVGEGIKAFPEAYGFGSVSTGGRGGTVRKVTNLNNSGTGSLRSAAELDNSIVIFETAGTIDLDTPISVGNNVTIYGQTAFRNGGQGITLKASATNEASLMIFSGKTNFLVQYVRFRRGVTPFATAATAGQTLALANGSTKIMIDHCSFGWDEDESLTIWDASEVTVQNSIVTNSLMVNDYGRQNTSKSLIVGNNADKVSIYKTLIGNADQRNALFGGSTSPIEQFEFKNNLIFNWGSIGTDFAGSQLPFKVNIIGNKWKAGHNSNISRHGLRATGNTGDLFYLEGNITISRPTDDLDEWLAIGNSATPSVALSSTFQQVTPFDYPLQYAPTYSIEELEGDVLKQMGVSLYVDYPDMLAKSHYTHGNGFIMNKPSDIGGYPVLEGFSKSIVDSNSDGIPDDFATANGITSSNQILPSFKFGTWNFDNSFRYTAIEVYAYYLTQK
Physico‐chemical
properties
protein length:677 AA
molecular weight: 73287,86020 Da
isoelectric point:4,97900
aromaticity:0,10340
hydropathy:-0,16573

Domains

Domains [InterPro]
DC_1265
STR
1–115
DC_1265 G3DSA:2.60.120.260 IPR012334
G3DSA:2.60.120.260
STR
101–236
G3DSA:2.60.120.260 IPR012334
IPR008979
STR
104–237
IPR008979 IPR052063
IPR011050
STR
240–523
IPR011050
AGO49141.1
1 677
Architecture
STR
STR 1-544 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGO49141.1
1 677
Domain Start End Length (AA) Confidence
N-terminal 1 84 84 0,9345
Central domain 85 525 442 0,7946
C-terminal 526 677 151 0,3805
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-84
Central
85-525
C-terminal
526-677

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi39:1
[NCBI] 		1327993 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGO49141.1 [NCBI]
Genbank nucleotide accession
KC821626 [NCBI]
CDS location
range 18139 -> 20172
strand +
CDS
ATGAAAAATTTTATTTATTTAGTATTACTATTTTTTTCTGTAGCTTCATATGGCCAGGCTAAAGAGGTTACTATTTATACTAAACGTATAGTAGAAACGCCTGAACAAATAAGTAATAAAATTAATAGTTTAACGGGTGAACAACGTATAGACGCTTCTGCTATTAAAAATTTACCAGAATTAGCAGATGGATCTGTAAATTATGGTAAATTATCAGAAGATGTTTTAGGTAGATTAAATCCTATTGATTTTACTATATCTGAAAATATTAAAAATTTACATACTTCTAGTGATCCTGCAGGCCCTAATGAATCTAATATTATTAATGCATGGGTAGATGCTTCTAATGTTTCTATAGCTTCTACTTCTGCAGATAGTTATTTAGGTGATTTGTCTATAATTGCGACTAAAATTAATAGTGGTTCAGGTGTTGTTTATTCTCCTAATTATACTGTAGATACAGGTAAAACATACATTTTTAAATGTAGGGTTAAAGTAGGTGGTGGTTTTGTTTCAGGTAGTAATATGTATTTATCTGATAAAACAGGAGCTTTTGTGCAGTCATTTATTAATGAAGCTGATTTAGGTTGGCAGGAACTAACGCAAACCTTAAGCTTTAGCAAAACTAGAACTAGGGTTAATATATCATTAAGTGCGCAGCCTGTAGGGGCTACTTTGTTAATAGATTCTTTTGAATTATATGAAGTCGGTGAAGGTATTAAAGCTTTTCCTGAAGCTTACGGATTTGGATCTGTATCTACAGGTGGTAGAGGTGGTACAGTTAGGAAAGTTACTAATCTAAATAATAGCGGTACAGGTAGTTTACGATCCGCTGCTGAATTAGATAATTCTATAGTAATATTTGAAACTGCAGGTACAATAGATTTAGATACTCCTATTTCTGTAGGAAATAATGTAACTATATATGGACAAACTGCATTTAGAAACGGAGGACAAGGAATAACTTTAAAAGCTTCTGCAACTAATGAAGCTTCTTTAATGATATTTAGCGGTAAGACCAACTTCTTAGTTCAGTATGTAAGATTTAGGAGAGGTGTTACACCTTTTGCTACAGCTGCTACAGCAGGACAAACATTAGCTTTAGCAAATGGTTCAACTAAGATAATGATAGACCATTGTTCTTTTGGTTGGGATGAAGATGAAAGTTTAACTATTTGGGATGCATCAGAAGTTACTGTACAAAATTCTATTGTTACTAATTCTTTAATGGTTAATGACTATGGTAGACAAAATACAAGTAAGAGTTTGATAGTAGGTAATAATGCAGATAAGGTTTCTATATATAAAACACTGATAGGTAATGCTGATCAAAGGAACGCTTTATTTGGCGGTAGTACTTCGCCTATAGAACAATTTGAATTTAAGAATAATCTGATATTTAACTGGGGTTCTATTGGAACTGATTTTGCAGGTTCTCAATTACCTTTCAAGGTTAATATTATTGGGAATAAATGGAAAGCGGGTCATAACTCTAACATAAGTAGACATGGGTTAAGAGCTACAGGAAATACAGGTGATTTATTTTATTTAGAAGGTAATATTACCATATCAAGACCTACAGATGATTTAGATGAATGGTTAGCTATAGGAAACTCAGCTACTCCATCAGTTGCTTTGTCTAGTACTTTTCAACAAGTTACACCTTTTGATTATCCATTGCAATACGCACCTACTTATAGTATAGAAGAGTTAGAAGGTGATGTATTAAAGCAAATGGGAGTTAGCTTATATGTTGATTATCCTGATATGTTAGCTAAATCTCATTATACTCATGGTAATGGATTTATAATGAATAAACCTAGTGATATAGGAGGTTACCCAGTTTTAGAGGGTTTCTCTAAAAGTATTGTAGATTCTAATAGCGATGGAATACCTGATGATTTCGCAACAGCTAACGGAATAACATCTAGCAATCAGATTCTGCCTTCTTTTAAATTTGGTACATGGAATTTTGATAATTCATTTAGATATACAGCTATAGAGGTCTATGCTTATTACTTAACACAAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6d418c70f0b764a1813f5d0a2b216b4a0079daec5f5d81022845db51577e88af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7483
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50