Protein

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UniProt accession

A0A075KJS1 [UniProt]

Protein name

Glycerophosphoryl diesterphosphodiesterase

RBP type

TSP

Evidence RBPdetect

Probability 0,90

Protein sequence

MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDVMNQTKSFVTSSVVDAKDDINRAVNARIAGARFIPKAFANADDLKKAYPKGQDGIFVVADTGHMWLFVNGDWKDCGVYQTPVQKNQTFTFQPSRDGFPNYDTATRKLDFRCITDKAQVTTPSGDAYRFPQHTVVDVNWEFTTGVIIFDTNTLSVISQNPYIPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDRAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGIIPIAHRGLNSIAPEESLEAYSLAVRSGYNDIECDIYFTEDGIPVLHHDATINSIARNSDGTELTQPVKIGERMLVELNSYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKRHYTDEQSQVLLDIVSKYRMANKVGWQSFDHSSLDYIASHDENAQLELLAGNITDDLIAEGKKRINGKRKVVLSVGQGVTQQLVDQAHSEGFDVYIWTVDDIDGAKKLINMGVDGIMTNGYIDLPNLLSNEYDLQVSNSPAVDLVTNLTWHRNTYINGKGDIYNLLGGMKDGEEHTFAHASGENWFTAIVNLKKNTYTLSFDAKSTVNNDNLTTLMRHVEMGDNNFNCVTAVNGTPVNPNSWGDNDVKLSDSYTRYSVTYTTYSDNKPFQIGFRTSSSTGTVSIKNIRLTAGTETSWGATICMMAYLDANQGETYYARQLEEGAWLNAPMVVTNDNLDAVPSTIITDSENHTFKITIPSGGTKLFLNSNESLVPTVFKQSASSGI

Physico‐chemical properties

protein length:	878 AA
molecular weight:	97642,27120 Da
isoelectric point:	5,16652
aromaticity:	0,09112
hydropathy:	-0,35501

Domains

Domains [InterPro]

DC_1065
STR
1–340

DC_1065 IPR017946 IPR008979 DC_1292

PTHR46211
Unmapped
371–614

PTHR46211 DC_1520 G3DSA:2.60.120.260

IPR017946
STR
375–615

IPR017946

IPR030395
ENZ
376–621

IPR030395

IPR017946
STR
378–612

IPR017946

cd08556
ENZ
379–612

cd08556

IPR030395
ENZ
381–612

IPR030395

PS50007
ENZ
385–429

PS50007

A0A075KJS1

1 878

Architecture

STR

RBD

STR 1-340 | STR 369-818 | RBD 819-878

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1065	STR	DC_1065	1	340	Novel HMM	DC_1065	Central	Low	Positional only	109 proteins / 109 hits
IPR017946	STR	IPR017946	369	621	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
PTHR46211	Unmapped	-	371	614	PANTHER	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	-	-	-	-
IPR017946	STR	IPR017946	375	615	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
IPR030395	ENZ	DC_0002	376	621	InterPro cluster	Glycerophosphodiester phosphodiesterase domain	Central	High	Text match	63 proteins / 165 hits
IPR017946	STR	IPR017946	378	612	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
cd08556	ENZ	DC_0002	379	612	InterPro cluster	GDPD	Central	High	Text match	63 proteins / 165 hits
IPR030395	ENZ	DC_0002	381	612	InterPro cluster	Glycerophosphodiester phosphodiesterase domain	Central	High	Text match	63 proteins / 165 hits
PS50007	ENZ	DC_0217	385	429	InterPro cluster	Phosphatidylinositol-specific phospholipase X-box domain profile.	Central	High	Text match	10 proteins / 10 hits
DC_1520	STR	DC_1520	615	668	Novel HMM	DC_1520	Central	Low	Positional only	6 proteins / 6 hits
IPR008979	STR	IPR008979	643	783	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	668	818	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
DC_1292	RBD	DC_1292	812	878	Novel HMM	DC_1292	C-terminal	Low	Positional only	6 proteins / 6 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

A0A075KJS1

1 878

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	370	370	0,9522
Central domain	371	637	268	0,7949
C-terminal	638	878	240	0,3401

Note: Constraints were applied during segmentation.
Fixed 11 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-370

Central
371-637

C-terminal
638-878

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Lactobacillus phage Ld25A [NCBI]	1500734	Uroviricota > Caudoviricetes > Cequinquevirus >
Host	Lactobacillus delbrueckii [NCBI]	1584	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

No CDS data available.

Genome Context

Gene Ontology

	Description	Category	Evidence (source)
GO:0008081	phosphoric diester hydrolase activity	Molecular Function	IEA:InterPro (UniProt)
GO:0006629	lipid metabolic process	Biological Process	IEA:InterPro (UniProt)

Tertiary structure

PDB ID

09733fe761075e8bcbb6224bf2fd593db95fd7c44c81e59e7230c40c62ac3496

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3054

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Gene Ontology

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence