Protein

View in Explore

Genbank accession

WKV22026.1 [GenBank]

Protein name

baseplate hub protein

RBP type

Evidence RBPdetect2

Probability 0,94

Protein sequence

MQIAPFRGAGGGGGGGGSFDRTNDNLFSRDTVELVLGLSVGPIRGLTRGMKSFYIGGTPLMAEAGNMNFESFNLGIKLGYESDTPVSYKLGGEASNKQVGTKMAQNSWITRQTEGTLRGVIDQLQVRLTVQQLYYQDDEGIYNNTAQFYIQYKPASSGWWQNYGGGMVQLNGKTQTGYYVDYVFDVPRIDDDWLIRVMKVNPDHDGAAVADIAWESFQCITKSNRRYNKLALVHIVALATSQFGSIPDFSGVYDGRIIQIPSNYNPDTHTYDELVPWNGTFKSGWTNCGPWILWDLIMNTDYGLRKYYPHITANRYDFYEAAKWCDTPVPDGKGGFQPRYTMNIALTEAKNGLEMLQWIAGSFGGVIFDDASGQIYLRVDKWEEPKMLFTPENVENGEFSYSFTDLTTRYNDMKVQFVNPDLDWNTDQRRITDPDHIRAYGNIDTEMVMVGCTDEHEAIRRGYYRMITATTETASVTFTTARLGKVVDPYTIVAIADPTPGWSMPGRIKRYYNSYIELRDPIYFLAQQNYALSLQTVDGLVKVVVDPEQVGLVYKLRVVSGFVPDGLPDRTVYTIEDNGNFGIAKPFRIMDVEAVEGSPDKYRFTAVEVNRNKQAGADNCTPVGSVQYSFKNPLIPPPPFNLRAESGTEHLMISQDGTLIARIFAFWEAPPNVLIERYEVQWKESRRSVWNSTPSPAESVLLGPCESGVAYDIVVWAVNSFGNRSAALTLFNYVCVGKSDPPSNVKNFTIRRRANDILLRWDPIPDLDRKGYEVRQGTTWETATVLVTDYAATQFAWTTTEGGNYTFLIRAIDSSGNYSLLPTAQTIYIQGPSAVTGVIAIQSNNRIELRWTPNPEDNILEYEIREGFTWGTGVFLAKVKSTSYSMTAGSSGTRMFWLKAIASPGVYSERATFVTRDIAQLDNANIIYTTDEVANGFAGTRYNMVVTGQTLRMDDGRAHAEYIFPVVLPTVFRAQNTLFVGLDAIVDQSTKWSEATYPWNDPRAQSPWTIPGDISSIGYKAEIAVRKGFPTNIRHSIPFNGNLVTEGSSSYNPAQVLDQTKVSYGTGKYGQGLYVTSYQNVPSGDPYTNVLLATPLPLVFSYGGWFRLLVNETRTITTLHTPSAALSIAYVKPYEALVWTTPDGKNVILPFKPELGERYMFLMVQDSGNRRLYVGKEDKTMASAEISATPYEVVTHLRFLT

Physico‐chemical properties

protein length:	1201 AA
molecular weight:	134324,68680 Da
isoelectric point:	5,33169
aromaticity:	0,12073
hydropathy:	-0,29675

Domains

Domains [InterPro]

IPR053171
Unmapped
8–820

IPR053171 IPR013783

DC_0129
STR
20–831

DC_0129 DC_1836

IPR055385
ATT
95–221

IPR055385 IPR032876 IPR013783 IPR013783

IPR003961
STR
636–722

IPR003961 IPR003961

IPR036116
STR
666–819

IPR036116

DC_0960
STR
795–927

DC_0960

WKV22026.1

1 1201

Architecture

STR

ATT

STR

ATT

STR

RBD

STR 20-94 | ATT 95-221 | STR 222-348 | ATT 349-510 | STR 511-930 | RBD 931-1034 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	8	820	InterPro	Viral Tip Attachment Protein	-	-	-	-
DC_0129	STR	DC_0129	20	831	Novel HMM	DC_0129	Central	Low	Positional only	234 proteins / 234 hits
IPR055385	ATT	DC_0360	95	221	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	349	510	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR013783	STR	IPR013783	633	731	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	636	722	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR036116	STR	IPR036116	666	819	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR013783	STR	IPR013783	741	829	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR003961	STR	DC_0003	741	832	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
DC_0960	STR	DC_0960	795	927	Novel HMM	DC_0960	Central	Low	Positional only	21 proteins / 21 hits
IPR013783	STR	IPR013783	832	930	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
DC_1836	RBD	DC_1836	890	1034	Novel HMM	DC_1836	C-terminal	Low	Positional only	21 proteins / 21 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Achromobacter phage 2-1 [NCBI]	3061295	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Achromobacter xylosoxidans [NCBI]	85698	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Genbank protein accession

WKV22026.1 [NCBI]

Genbank nucleotide accession

OQ974181 [NCBI]

CDS location

range 25503 -> 29108
strand +

CDS

ATGCAGATTGCACCTTTCCGTGGAGCTGGTGGTGGAGGCGGCGGTGGTGGGTCGTTTGATCGCACCAACGACAACCTCTTCTCCCGCGATACCGTCGAGCTGGTCCTGGGCCTGAGCGTCGGACCCATCCGTGGTCTGACCCGTGGCATGAAGAGCTTCTATATCGGCGGCACGCCACTGATGGCTGAAGCCGGGAACATGAACTTCGAATCTTTCAACTTGGGCATCAAGCTCGGGTATGAAAGCGACACGCCTGTGAGCTACAAACTGGGAGGTGAGGCGTCGAACAAGCAAGTCGGCACCAAGATGGCCCAGAACTCGTGGATCACGCGCCAGACAGAAGGGACGCTGCGCGGCGTAATCGACCAGTTGCAGGTCCGTCTCACGGTTCAGCAGCTCTACTATCAAGACGACGAAGGCATCTATAACAACACCGCTCAGTTCTACATCCAGTACAAGCCGGCCTCGTCCGGCTGGTGGCAGAACTATGGCGGCGGGATGGTCCAGCTCAACGGCAAAACCCAGACCGGCTACTACGTGGACTACGTGTTCGACGTGCCGCGTATTGATGACGACTGGCTCATCCGCGTGATGAAGGTGAACCCCGATCATGATGGGGCCGCCGTGGCTGACATCGCCTGGGAAAGCTTCCAGTGCATCACGAAGTCGAATCGCCGCTACAACAAGCTGGCGCTGGTCCACATCGTCGCACTGGCCACCAGCCAGTTCGGGTCGATCCCGGACTTCTCGGGTGTCTACGACGGCCGCATCATTCAGATTCCTTCGAACTACAACCCGGACACGCACACCTACGACGAGCTGGTGCCGTGGAACGGCACGTTCAAGTCCGGCTGGACCAACTGTGGTCCTTGGATCCTCTGGGATCTGATCATGAACACGGACTATGGTCTGCGGAAATACTATCCGCACATCACAGCCAACCGTTACGACTTCTACGAAGCAGCGAAGTGGTGTGACACGCCTGTGCCTGATGGTAAGGGCGGCTTCCAGCCGCGCTACACCATGAACATCGCGCTGACCGAAGCGAAGAACGGCCTGGAGATGCTGCAATGGATTGCTGGCAGCTTCGGAGGCGTGATCTTCGATGACGCGAGCGGCCAGATCTATCTGCGCGTGGACAAGTGGGAAGAGCCGAAGATGCTCTTCACGCCGGAGAACGTAGAGAACGGAGAGTTCAGCTACAGCTTCACTGACCTCACGACGCGCTACAACGACATGAAGGTCCAGTTCGTCAACCCCGATCTGGACTGGAACACCGACCAACGACGCATCACCGACCCCGATCACATCCGTGCCTATGGAAACATCGACACTGAGATGGTCATGGTCGGGTGTACCGACGAGCACGAGGCGATTCGACGCGGCTACTACCGCATGATCACCGCGACGACTGAGACCGCTTCGGTGACGTTCACTACGGCGCGTCTTGGCAAGGTGGTCGATCCTTACACCATTGTGGCCATCGCCGATCCGACCCCTGGTTGGTCGATGCCCGGTCGCATCAAGCGCTATTACAACAGCTACATCGAGCTGCGGGATCCGATCTACTTCCTGGCCCAACAGAACTACGCGCTGTCGCTTCAGACCGTGGACGGTCTCGTGAAGGTCGTGGTGGATCCTGAGCAGGTCGGCCTCGTGTACAAGTTGCGCGTGGTCTCCGGCTTCGTGCCTGATGGTCTGCCTGACCGCACGGTCTACACCATCGAAGACAACGGCAACTTCGGGATCGCCAAACCCTTCCGCATCATGGATGTGGAAGCGGTGGAAGGAAGCCCCGACAAGTACCGCTTCACGGCAGTAGAGGTGAACCGCAACAAGCAGGCCGGCGCGGACAACTGCACGCCTGTGGGAAGCGTTCAATACTCGTTCAAGAACCCTCTGATCCCGCCGCCTCCGTTCAACCTGCGAGCTGAGTCTGGCACTGAGCACTTGATGATCTCGCAAGATGGAACCTTGATCGCTCGCATCTTCGCGTTCTGGGAAGCACCGCCGAACGTGTTGATCGAACGCTACGAGGTGCAGTGGAAGGAGAGCCGGCGGTCGGTGTGGAACTCGACGCCCAGTCCCGCCGAAAGCGTGTTGCTAGGCCCGTGCGAGAGCGGCGTGGCCTACGACATCGTGGTCTGGGCCGTGAACTCGTTCGGCAACCGCTCGGCGGCGCTGACGCTGTTCAACTACGTCTGCGTGGGCAAGAGCGACCCTCCGTCGAACGTGAAGAACTTCACGATCCGTCGTCGCGCCAATGACATCCTGTTGCGCTGGGATCCTATCCCCGACCTTGACCGCAAGGGCTACGAGGTTCGGCAAGGCACGACCTGGGAAACTGCAACCGTGCTGGTTACGGACTATGCGGCCACGCAGTTCGCCTGGACCACCACGGAAGGCGGCAACTACACCTTCTTGATCCGCGCCATCGACTCGTCTGGCAACTACTCGCTGCTGCCCACGGCCCAGACGATCTACATCCAAGGCCCGAGCGCGGTCACGGGCGTGATCGCCATTCAGTCGAACAACCGGATCGAACTGCGCTGGACCCCGAACCCTGAAGACAACATCCTGGAGTATGAGATCCGGGAAGGCTTCACTTGGGGTACAGGCGTGTTCTTAGCCAAGGTGAAGTCCACCAGCTACAGCATGACGGCCGGCTCGTCCGGCACGCGCATGTTCTGGCTGAAGGCCATCGCTTCGCCTGGGGTGTACTCGGAGCGCGCCACGTTCGTGACCAGGGACATTGCGCAGCTGGACAACGCCAACATCATCTACACCACCGACGAGGTGGCCAACGGCTTTGCTGGCACGCGCTACAACATGGTCGTGACCGGCCAGACGCTGCGCATGGACGATGGCCGCGCCCACGCCGAGTACATCTTCCCCGTGGTGCTGCCCACGGTCTTCCGCGCCCAGAACACGCTGTTCGTCGGCCTGGACGCCATCGTGGACCAAAGCACCAAATGGTCGGAAGCCACGTACCCGTGGAACGATCCTCGCGCCCAATCTCCGTGGACGATTCCTGGAGACATCTCGTCCATTGGCTACAAGGCCGAGATCGCCGTGCGTAAGGGCTTCCCGACGAACATCCGGCATTCCATTCCGTTCAACGGAAACCTTGTCACCGAAGGTTCATCTTCCTACAACCCCGCCCAGGTTCTGGATCAGACGAAAGTCAGCTATGGCACCGGCAAGTACGGCCAAGGACTGTATGTGACGAGCTACCAGAACGTCCCTTCTGGAGATCCCTACACGAACGTTCTGTTGGCCACGCCGTTGCCGCTCGTCTTCAGCTATGGCGGCTGGTTCCGTCTTCTCGTTAACGAGACTCGCACCATAACGACGCTTCACACACCATCTGCGGCGTTGAGCATTGCCTACGTCAAACCTTACGAGGCGCTGGTATGGACTACCCCGGATGGAAAGAACGTCATCCTGCCGTTCAAACCTGAACTCGGGGAACGCTATATGTTCCTGATGGTTCAAGATTCCGGGAACCGTCGCCTGTACGTTGGCAAAGAAGACAAGACCATGGCGAGTGCGGAGATCTCCGCAACTCCCTATGAGGTCGTCACCCACCTGAGATTCCTGACATGA

Genome Context

Tertiary structure

PDB ID

4330dc37a72a2e953b23dbdbb398c9ea0837aec52fafe44e5119eef0095f85ba

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,2604

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
A Case of Phage Therapy against Pandrug-Resistant Achromobacter xylosoxidans in a 12-Year-Old Lung-Transplanted Cystic Fibrosis Patient	Lebeaux,D., Merabishvili,M., Caudron,E., Lannoy,D., Van Simaey,L., Duyvejonck,H., Guillemain,R., Thumerelle,C., Podglajen,I., Compain,F., Kassis,N., Mainardi,J.L., Wittmann,J., Rohde,C., Pirnay,J.P., Dufour,N., Vermeulen,S., Gansemans,Y., Van Nieuwerburgh,F. and Vaneechoutte,M.	2021	33466377	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature