Protein

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Genbank accession
XYO02700.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSIQVTGIIEGPLGTPSPGITIRVVSKISYRNTYRLSTEDHVTTTGGAYDFQLNEGFHKILIRYRGASSFTKLGDVSVSDQTPSPITLINLLESSSPKALVVKLQELADEASESAQSASDDADQVALDKQQVTLLAQQVSDDADQVALDKAAAAQSEANAAQSETNASQSASDAQQSADDAAAIVPNLQSQIDDRVTYPELTTAQNDIVGGSIFKGLNGETIQNGDVVPAGTTHLRVLVNGSPKLVTMDVTASGVVSNLTDWTATIGGTSVYFIPAVNPNDPVSWDADPTGMIDSTNAFRRMSDALVPPIKHSGTFRIDDILTSPISVVDGFDMSGAKVICSAVDSEAEGFNRSSYIFAIEQGYIDVTSDFTVSEFVKGATKLTNPQGYEGHLFFNSNTVQMLRNDNGNLSDVFRREPNVITSSGQLMFPMYLVFFTVGVTVSLKRFNENREYKFPDFEITGAIRSPVRTERNNSKVTLGIITQTQDNAIHAPHEAWDSCLVELTEYTRPKSGNLASPRIVGYPALHFNSCLITYDSITASDVSGWGGIDGNYSRGILVKDSHVTRVSGHAFCSDIKVVNSTIYDQAAIHGYGKYEVINNKISFRGEGFKALVQTREDYMSSWDGEIIIKNCEWDVIGSLDESRIVQCLPATYDGRPSGVTDFVAFEPTVQVDGITFDVKVPTPAVGYYTITGMYLGGSGGDNTHLDKKRLPDNICSIKNIATNSSIDIKYNPITNGRGYAAVANVPALARHNKFDFIAENWTATRYYTPENYNDGSLFGLQTFQFSGTSNIEQNYTIRNCDWINVLYKTPDKCNVTFDGGNTLGVRAAGFINQPTVNVTTSLVTYRGGVNLVDPDTQVGGTPIKMPIAVESAIFRHGSYFTGVEPASLQTMGGNKFNSQVVLMIADSAIIDKSSSANEVTSNTLLDDATYGKSHSDYYEEQETYTGTLTLTGGVTVDVVRGRIVSSTP
Physico‐chemical
properties
protein length:969 AA
molecular weight: 104846,42080 Da
isoelectric point:4,77757
aromaticity:0,08462
hydropathy:-0,21620

Domains

Domains [InterPro]
Coil
Unmapped
101–121
Coil DC_2319
XYO02700.1
1 969
Architecture
STR
STR 145-306 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYO02700.1
1 969
Domain Start End Length (AA) Confidence
N-terminal 1 295 295 0,9950
Central domain 296 909 615 0,9728
C-terminal 910 969 59 0,8448
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-295
Central
296-909
C-terminal
910-969

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpM-PP270
[NCBI] 		3384823 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYO02700.1 [NCBI]
Genbank nucleotide accession
PV883422.1 [NCBI]
CDS location
range 27947 -> 30856
strand -
CDS
ATGAGCATTCAGGTAACTGGCATTATAGAGGGTCCACTAGGAACCCCGTCGCCAGGAATAACAATCCGCGTTGTATCAAAGATAAGCTACAGAAACACTTACCGACTATCTACAGAAGACCATGTAACCACAACTGGCGGCGCTTATGATTTCCAGTTGAATGAAGGTTTTCACAAAATACTAATCCGCTACCGTGGTGCATCATCATTCACAAAACTTGGTGATGTTAGCGTTAGCGATCAAACTCCGTCACCAATCACTCTAATAAATCTATTGGAATCATCATCACCTAAAGCGCTGGTGGTCAAGCTTCAAGAATTGGCTGACGAGGCGAGTGAGTCCGCTCAAAGCGCATCGGATGACGCCGACCAAGTTGCACTGGATAAGCAGCAAGTGACGCTGCTGGCTCAACAGGTTTCCGATGATGCCGATCAGGTTGCGTTAGATAAAGCGGCAGCCGCACAATCTGAAGCGAATGCGGCTCAAAGCGAAACCAACGCTTCACAAAGCGCATCGGACGCCCAGCAGAGCGCAGACGATGCAGCCGCCATTGTCCCAAACTTGCAATCTCAGATAGATGATAGGGTAACTTACCCTGAACTAACCACAGCGCAAAACGACATCGTAGGCGGTTCGATATTTAAGGGATTGAATGGTGAGACCATTCAGAATGGTGACGTAGTTCCAGCAGGAACTACACACCTTCGTGTTTTGGTTAACGGTTCTCCAAAGCTAGTTACTATGGATGTAACAGCAAGTGGCGTTGTTAGCAACCTTACAGATTGGACAGCTACGATCGGCGGAACTAGTGTATATTTCATTCCGGCGGTAAACCCTAACGACCCCGTTTCGTGGGATGCAGACCCTACAGGTATGATTGATTCAACCAATGCATTTAGAAGGATGAGTGACGCACTGGTTCCACCGATAAAGCATAGCGGCACATTTAGAATTGACGACATACTGACATCACCTATTTCTGTTGTAGATGGGTTCGATATGTCAGGGGCAAAAGTTATCTGTTCAGCGGTGGATAGTGAGGCAGAGGGATTTAACAGGTCATCTTACATATTTGCTATCGAGCAAGGTTACATAGACGTAACTTCTGATTTTACAGTTTCTGAATTTGTTAAAGGCGCAACAAAGCTAACCAACCCTCAAGGATATGAAGGGCACTTGTTTTTTAACTCGAACACTGTGCAGATGCTGAGAAACGACAATGGTAACTTGAGTGACGTTTTCCGTAGGGAGCCAAATGTAATAACAAGCTCAGGACAGTTAATGTTCCCTATGTATCTGGTTTTCTTTACTGTTGGCGTGACCGTAAGTCTCAAGAGATTCAATGAGAACAGAGAGTATAAGTTTCCAGATTTTGAAATAACTGGAGCGATAAGAAGTCCGGTAAGGACCGAAAGAAACAACTCAAAGGTAACACTTGGGATAATCACCCAAACTCAAGATAATGCTATACACGCCCCGCATGAAGCTTGGGACTCCTGTCTTGTTGAGCTGACTGAATACACTCGACCTAAATCTGGTAATCTTGCCTCACCTAGAATCGTTGGATACCCTGCGCTGCACTTTAACTCATGCCTAATAACTTACGACAGCATTACGGCAAGTGATGTCAGTGGTTGGGGTGGTATTGATGGGAATTATTCACGAGGAATCTTAGTTAAAGATTCTCATGTAACAAGAGTTTCTGGTCACGCCTTCTGTAGTGATATAAAGGTTGTAAACTCTACAATTTATGACCAAGCAGCAATACACGGATATGGTAAGTATGAAGTCATAAACAATAAAATCTCTTTCCGTGGCGAAGGGTTTAAGGCACTAGTACAGACTCGTGAGGATTACATGTCGTCATGGGATGGTGAGATCATCATTAAAAACTGTGAGTGGGATGTTATAGGCTCTCTAGATGAATCTCGTATAGTTCAGTGTTTGCCAGCTACTTATGACGGTAGGCCATCCGGTGTGACGGATTTCGTTGCCTTTGAGCCTACCGTGCAAGTCGATGGCATTACGTTTGATGTAAAAGTTCCCACTCCTGCCGTAGGATATTACACGATAACAGGCATGTATTTAGGCGGTTCTGGTGGTGATAATACACACTTAGACAAAAAGCGGCTGCCTGACAATATATGTTCAATTAAAAACATAGCGACAAATTCTTCAATAGACATTAAATACAATCCTATAACCAACGGACGCGGCTACGCAGCAGTAGCAAACGTACCTGCATTGGCAAGGCATAACAAATTTGACTTTATTGCTGAAAATTGGACAGCAACTAGGTATTACACGCCTGAGAATTACAATGATGGATCGTTGTTCGGATTGCAGACATTCCAGTTTAGCGGAACGTCTAATATTGAGCAAAACTACACGATTCGTAATTGTGACTGGATAAACGTACTCTATAAGACGCCAGATAAGTGTAACGTCACATTTGACGGTGGTAATACATTAGGTGTTAGGGCAGCTGGATTCATTAACCAACCTACAGTTAACGTCACAACGTCACTTGTGACTTACAGAGGCGGTGTGAATTTGGTTGATCCTGACACCCAAGTCGGCGGAACGCCTATCAAGATGCCAATTGCTGTTGAGTCTGCAATATTCAGGCACGGCAGTTACTTTACAGGTGTTGAACCTGCGTCACTGCAAACTATGGGTGGTAATAAGTTCAATTCACAAGTGGTGCTAATGATTGCTGACTCAGCAATTATTGATAAGTCATCAAGTGCCAATGAAGTAACATCAAACACCTTGCTAGACGATGCGACTTACGGCAAGAGTCATAGTGATTATTATGAAGAACAAGAAACCTACACTGGAACGTTAACTCTTACAGGGGGCGTTACTGTTGATGTTGTTAGAGGTAGGATAGTTAGTTCCACGCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
09c73175691c0317126f2b54a4b0194cd6b4729c59db362e9d21f032668bf1a8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6862
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50