Protein

View in Explore
Genbank accession
QDH84412.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MKQLPSVNLADNALNPYAKQKFVKVQTGQRISTVLREIGYLSGRGASAKRSHPFYVEVNGKPVLFEGWGYRIRASDTVNIVNLPKGGGGGSNPLQIVMMIAVVVAAVYTGGAVGAAYGAGYGAAAQAGVMVAGMAIISLVTPTPSLATNMGKQETSPTYSINAQGNAARLGQAIPVSYGEVNQFPDYAAAPYTEINGSEQYLYQLFVLTQGHTQINQIFIENTPVEQFTGVQMQVVQPGEAVTLFPSNVYTVPEVNNNELVAPNLGGTMVGPFVAVPIGEKANALGFDISFPRGAFRMDSKGKQKSHNLSYMIEYQRLDDTTGNPVGNWILVTNETVTFNTEQPQFRSYRIDVEPGRYQVRAIRLSSNEDNKQIGEIRWSNVRSYMPGSQRYGDVTLLAMIIKATNQINQNIQRRVRINHTRRLRTWNPVDGWSAAVSPTRNPAWALADMASNPIYGPGYGASKIDMFELYRLSQVWAQRGDNFDFVFDGQIQFWEALSVTARVGRAYPLMSAGMLSFVRTEPKTMPSFMFSPNNIVKDTFDVEYSFSDGVSTPDYVIVEYTNPETNQPETVDCILPGMAGTRPGTLKLLGCTSRDQAWREGISLAAANRDQRKVINFTTERAGSIPRVGDLVRVSHDMPAWGYSGKVLGFNPTSDTIEIHDDKGNVIDTMLPFELRTTEDMPFLSGIQHSIAFQKRNGAPDGPHRALIHPSGDRKKCIISTANPRSIYISDGIRQEMTGYQFGPDERRGLSAIVISAAPDERGRVRMALTNYAESVHTAETGSAPLPGPDSNLPEANAAPIIDSVKFEPSAYSGEYFLRATPANGASYYEFQTSVNGTQWQSAGVSPDPYIKLYLSPGTYWGRVRAFGRAMGPWATTQQVLDGTVLPIPEIIAASATQNNFDTIVFSWVVDPDMEHAVSKFHVFYSTNDTDRESSVSVGSSGRSFTYHTDKFASERWFWIQVEDTDGRLGQIKGPYYGKSTSDANYALDMLEGEIGQNQFVQALNEKIDRIDTLTGDVEGLWAGIEHERQERVSADSALASDILDVQAGIGETMAAVQVVAQAQSDFQGKVAANYAIKVQVDANGNKYAAGMSLDVSESVGGDYQSTVAFVADRFVIMNQIGGSLQSPFMVVNGQVLIRQALIGDAWITNAHIQNAAITNAKIADAQITASKIGYAQINNTHIADAQITMAKIGVAQIDTLRLTSGAVTTGQSFGFSIQVGRSSGTDAYAYAVYMPYGGTGMIFMNYSFVADWQNSRCYARCDTDGYVFLDSQMILTSEGKPEWQPNHRASYITATYGWAFNFQVTVWCQRPVTGYNYYSGRIAMLGLQR
Physico‐chemical
properties
protein length:1331 AA
molecular weight: 145699,00890 Da
isoelectric point:5,62754
aromaticity:0,10068
hydropathy:-0,24350

Domains

Domains [InterPro]
DC_0129
STR
1–1120
DC_0129 G3DSA:2.160.10.20
NF040662
Unmapped
279–778
NF040662 IPR053171 DC_1302
IPR055385
ATT
280–385
IPR055385 IPR032876 IPR015406
QDH84412.1
1 1331
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 1-279 | ATT 280-385 | STR 386-510 | ATT 511-642 | STR 643-1120 | RBD 1121-1331
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDH84412.1
1 1331
Domain Start End Length (AA) Confidence
N-terminal 1 642 642 0,7540
Central domain 643 1198 557 0,1118
C-terminal 1199 1331 132 0,9683
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-642
Central
643-1198
C-terminal
1199-1331

Taxonomy

  Name Taxonomy ID Lineage
Phage Achromobacter phage vB_AxyS_19-32_Axy19
[NCBI] 		2591053 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH84412.1 [NCBI]
Genbank nucleotide accession
MK962636.1 [NCBI]
CDS location
range 37924 -> 41919
strand +
CDS
ATGAAACAGCTACCTAGCGTTAACCTTGCCGATAACGCATTGAACCCGTATGCGAAGCAAAAGTTCGTCAAAGTGCAGACGGGCCAACGCATCAGTACGGTGTTGCGCGAAATCGGCTATCTGTCCGGCCGTGGTGCCAGCGCGAAACGCTCGCATCCGTTCTACGTAGAAGTGAACGGAAAGCCCGTCCTGTTCGAAGGCTGGGGCTATCGCATTCGCGCATCGGATACCGTGAACATCGTCAACCTGCCGAAGGGTGGTGGCGGTGGCTCGAACCCGCTGCAAATCGTCATGATGATCGCGGTCGTCGTGGCCGCTGTCTACACCGGCGGCGCTGTGGGCGCTGCGTACGGCGCGGGCTATGGTGCAGCCGCCCAGGCGGGCGTTATGGTCGCGGGCATGGCGATTATCTCGCTGGTAACGCCTACGCCGTCGCTCGCAACGAATATGGGCAAGCAGGAAACGTCCCCGACGTACAGTATCAACGCCCAGGGCAACGCGGCGCGACTCGGGCAAGCTATCCCGGTTTCGTATGGTGAAGTGAATCAGTTCCCCGACTACGCCGCCGCGCCCTATACCGAAATCAACGGGTCCGAACAATACCTGTATCAACTGTTCGTATTGACGCAAGGTCATACGCAAATCAACCAAATTTTCATCGAGAACACCCCCGTCGAACAATTCACGGGAGTTCAGATGCAAGTCGTGCAGCCCGGCGAAGCCGTGACCCTGTTCCCCTCGAACGTCTACACGGTCCCCGAGGTGAACAACAACGAACTCGTCGCGCCGAATCTTGGCGGAACGATGGTCGGCCCGTTTGTCGCTGTACCCATCGGCGAAAAGGCGAACGCACTCGGGTTCGATATCTCGTTCCCGCGTGGCGCGTTCCGAATGGACAGCAAGGGCAAACAGAAGTCGCATAATCTGTCGTACATGATCGAGTATCAGCGGCTGGACGACACGACCGGTAACCCCGTCGGCAACTGGATTCTCGTAACGAACGAAACTGTCACATTCAACACCGAGCAACCGCAGTTTCGCTCATACCGCATCGACGTTGAACCGGGCCGCTATCAGGTCCGCGCAATTCGCCTATCGTCGAACGAAGACAACAAGCAAATCGGTGAAATCCGCTGGTCGAACGTCCGTTCGTACATGCCCGGATCGCAACGCTACGGCGATGTGACGTTGTTGGCGATGATCATCAAGGCGACGAACCAGATTAACCAAAACATTCAACGTCGCGTGCGCATCAACCATACTCGCCGTTTGCGTACGTGGAACCCGGTTGACGGATGGTCGGCCGCTGTGTCGCCCACACGCAATCCGGCATGGGCGCTCGCCGACATGGCGTCGAACCCGATCTACGGCCCGGGCTATGGCGCGTCGAAGATCGACATGTTCGAACTCTATCGCCTGTCGCAAGTATGGGCGCAACGTGGCGACAACTTCGACTTCGTGTTCGACGGGCAAATCCAGTTTTGGGAAGCCCTTAGCGTCACTGCCCGCGTAGGCCGTGCGTACCCGCTGATGAGCGCTGGCATGTTGTCGTTCGTTCGCACCGAACCCAAGACGATGCCGTCGTTCATGTTCTCGCCGAACAACATCGTTAAGGATACGTTCGACGTTGAATACTCGTTCAGCGATGGCGTATCGACCCCCGACTACGTTATCGTAGAGTACACGAACCCCGAAACCAATCAACCCGAAACCGTCGATTGCATCCTGCCCGGGATGGCCGGAACTCGCCCCGGCACGCTCAAGCTGCTGGGATGCACCAGCAGGGATCAAGCATGGCGCGAAGGTATCTCGCTGGCCGCTGCGAACCGTGATCAGCGTAAAGTGATCAACTTCACGACCGAACGCGCCGGGTCTATCCCGCGTGTGGGCGACCTTGTGCGCGTGTCTCACGATATGCCCGCCTGGGGCTACAGCGGTAAGGTGCTCGGCTTCAATCCGACTTCGGACACTATCGAAATTCACGACGACAAGGGTAACGTGATCGATACCATGTTGCCGTTCGAGCTTCGCACGACCGAAGACATGCCGTTCTTGTCCGGCATTCAACACAGCATCGCATTCCAGAAGCGAAACGGCGCACCGGATGGTCCGCATCGGGCTTTGATCCACCCCAGCGGTGATCGCAAAAAGTGCATCATTTCCACCGCGAACCCGCGTTCGATTTACATCAGCGACGGCATTCGCCAGGAAATGACCGGTTATCAATTCGGTCCCGATGAGCGTCGCGGACTGTCTGCCATCGTGATCAGCGCGGCCCCCGATGAACGTGGTCGCGTGCGCATGGCGTTGACGAACTACGCCGAATCGGTTCACACGGCCGAAACGGGTAGCGCTCCGTTACCCGGTCCCGATTCGAACCTACCCGAAGCTAACGCCGCGCCGATCATCGATTCGGTTAAGTTCGAACCGTCCGCATACAGCGGCGAATACTTCCTTCGCGCAACCCCGGCGAACGGCGCGTCCTACTACGAGTTCCAAACGTCGGTTAACGGCACGCAATGGCAATCGGCCGGAGTGTCGCCCGATCCGTACATCAAACTGTACCTGTCCCCTGGCACGTATTGGGGTCGCGTGCGTGCGTTTGGTCGTGCGATGGGACCATGGGCCACGACGCAGCAGGTTCTGGACGGAACGGTTCTCCCGATCCCTGAAATCATCGCCGCAAGCGCAACGCAAAACAACTTCGATACTATCGTGTTTTCCTGGGTCGTCGATCCCGACATGGAACACGCCGTTTCGAAGTTCCATGTGTTCTACAGCACGAACGATACGGATCGCGAATCGTCGGTGTCGGTCGGATCGAGCGGCCGAAGCTTCACTTATCACACCGATAAATTCGCATCCGAACGCTGGTTTTGGATTCAGGTTGAAGATACTGACGGGCGTCTAGGTCAAATCAAGGGTCCGTATTACGGTAAATCGACCTCTGACGCCAATTACGCACTCGACATGCTGGAAGGTGAAATCGGTCAGAATCAATTCGTACAGGCCCTGAACGAAAAGATCGACCGCATCGATACCCTTACCGGCGATGTTGAGGGTCTGTGGGCGGGAATCGAACACGAGCGGCAAGAACGAGTGAGTGCTGATTCCGCGCTCGCAAGCGACATTCTCGATGTGCAAGCGGGTATCGGCGAAACCATGGCCGCAGTACAGGTCGTGGCACAAGCGCAATCTGACTTTCAAGGCAAGGTCGCAGCGAACTACGCTATCAAAGTTCAAGTTGACGCGAACGGCAACAAGTACGCGGCGGGCATGTCCCTAGACGTGTCCGAAAGCGTAGGCGGGGATTATCAATCGACCGTTGCATTTGTGGCTGATCGTTTCGTCATCATGAACCAAATTGGTGGTTCGCTACAATCGCCGTTCATGGTTGTCAATGGTCAGGTGCTGATTCGTCAAGCGTTGATCGGTGACGCCTGGATTACCAACGCGCATATCCAAAATGCAGCGATCACGAACGCCAAGATCGCAGACGCGCAAATCACGGCATCGAAGATCGGTTACGCGCAGATTAACAACACGCACATTGCAGACGCGCAAATCACGATGGCGAAGATCGGCGTAGCGCAAATCGATACGTTGCGCCTAACGTCCGGTGCAGTGACGACCGGACAATCGTTCGGATTCTCGATTCAAGTCGGCCGCAGTAGCGGTACGGACGCTTACGCCTATGCTGTGTACATGCCGTACGGCGGAACCGGGATGATCTTCATGAACTATTCGTTCGTGGCCGATTGGCAAAACTCGCGCTGCTACGCACGATGCGATACCGACGGCTATGTTTTCTTGGATAGCCAGATGATATTGACTTCCGAAGGCAAGCCCGAATGGCAACCCAATCATAGGGCGAGCTATATCACCGCAACGTACGGATGGGCGTTCAACTTTCAAGTTACGGTATGGTGCCAGCGTCCAGTCACCGGCTATAATTACTACTCCGGCCGAATCGCCATGCTAGGACTGCAACGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e46e7cb6dc809ab8842c57a13e0dfa72b42098653338db0ea73bfa5fedc249d8
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7780
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of sixteen phages from Abidjan, cote d'Ivoire, isolated on a single strain of Achromobacter xylosoxidans Essoh,C., Vernadet,J.-P., Vergnaud,G. and Pourcel,C. 2020-01-02 — GenBank