Protein

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Genbank accession
XYM48773.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MYVLVRSRYRPSRRGGRWQEADFTNELVTTLAAKYGDIYLYIQYPGQGEPVTRALHWVNVTNWLNDVEPTVTVQEWLTSLGNKALPFDAELPNEKIRLVKYAQAWHCGYNFTPVARGGHPLDQGSDFHKEDLLMTHPKHQPSKIRDYSMISVNGYFHLCDYTSAGVRIIDGNTTLRKCNDNQIGVYSFETIGKLTFVPIVDSMISGLNPTAPLWDGTYLTMPENVDIENKTVLLVTGGYLNVLSSVYNRVGERTWRVQFGNMMFLDRYLESYHAMDLSSLGLTFDKENPTLFNVDELKNNDVIRKYLTLSQSFFVIVDSQSFFQEYEAVEYLNLPGRYFDNKYDRSPLVGAYGRMLDYHTIKEPHHEGIIPQHENMYVYCAVLNRRNSYDANTRAWPEQEIVDGGRYPAHPFRDETAYYRILGVEG
Physico‐chemical
properties
protein length:426 AA
molecular weight: 49168,82490 Da
isoelectric point:5,73462
aromaticity:0,12911
hydropathy:-0,43638

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM48773.1
1 426
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,7911
Central domain 27 231 206 0,5249
C-terminal 232 426 194 0,6315
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-231
C-terminal
232-426

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiHQ
[NCBI] 		3402740 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM48773.1 [NCBI]
Genbank nucleotide accession
PV029745 [NCBI]
CDS location
range 172390 -> 173670
strand +
CDS
ATGTACGTGCTTGTACGTTCTAGGTATCGCCCTAGTCGCCGAGGTGGTCGGTGGCAGGAAGCGGACTTTACAAATGAGCTAGTAACTACACTAGCTGCGAAGTATGGGGATATTTATCTCTACATCCAATATCCTGGCCAAGGTGAGCCTGTAACAAGAGCACTGCACTGGGTTAATGTTACTAACTGGCTAAACGATGTTGAACCAACTGTTACTGTTCAAGAGTGGTTAACCTCTTTAGGTAATAAAGCTCTACCTTTTGATGCAGAACTACCTAACGAAAAAATTCGTTTGGTAAAGTATGCTCAAGCATGGCACTGTGGTTATAACTTTACCCCAGTTGCTCGTGGAGGCCATCCTTTAGATCAAGGGAGTGATTTCCATAAGGAAGATCTCCTTATGACTCATCCAAAACATCAGCCTTCAAAGATCAGAGATTATTCCATGATCTCTGTTAATGGTTATTTCCATTTATGTGACTATACCAGTGCTGGTGTAAGGATTATTGATGGAAATACGACGTTACGTAAATGTAACGATAACCAAATTGGTGTTTACAGTTTCGAAACTATTGGTAAGCTTACTTTTGTTCCTATTGTTGACAGTATGATTAGCGGACTTAATCCCACTGCCCCTTTGTGGGATGGTACTTATCTAACCATGCCTGAGAATGTTGACATCGAGAATAAAACTGTATTGCTTGTTACTGGCGGTTATCTAAACGTTCTATCTAGTGTTTATAATCGTGTAGGCGAAAGAACATGGAGAGTTCAGTTTGGTAACATGATGTTTTTAGATCGTTATCTAGAGTCATACCACGCAATGGATCTCTCTTCTCTCGGATTAACATTCGATAAAGAGAACCCGACTCTATTCAATGTAGATGAACTCAAAAACAATGATGTTATCCGAAAGTATTTAACTCTTAGTCAGAGTTTCTTTGTAATCGTTGATTCCCAATCATTCTTCCAGGAATACGAAGCTGTAGAATATCTCAATCTACCTGGACGTTACTTCGATAACAAATACGATAGATCGCCTCTCGTTGGTGCGTATGGTAGGATGCTAGATTATCACACAATCAAAGAACCTCACCATGAAGGTATAATCCCTCAACATGAAAATATGTATGTCTACTGCGCTGTATTAAACCGTAGGAATTCCTATGATGCTAATACGCGAGCATGGCCTGAGCAAGAGATCGTTGATGGTGGACGTTATCCAGCTCATCCGTTTAGAGACGAGACAGCATATTATCGAATTTTAGGGGTTGAAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9752f2b5fc5f238555967d44ae80f1c76db1d7149cc7d851d858bbae03a8736f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8969
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of Phikzvirus realted Pseudomonas phage phiHQ: A Promising Candidate Against Uropathogens Qamar,H., Khan,M.S.I., Afzal,S. and Malik,K. 2022-09-14 — GenBank