Protein

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Genbank accession
YP_010668865.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,91
Protein sequence
MNRIDVPLYSLDLTGESPFNRVTREEGVRSSNQLVIPNAAPFYIDSVTITHVDGTPMDLGKDYDFYGILANLTEYTAKSVGLYIRFLNDDIKEWIVSYNTVGNFNKITTEILNMLKAITEDDRPVHWDNIDNKPLWFVPELHQHDYTFHFFGFSDLARELLRVQQYSALFNDGVQTDLDMFNMRLESYISEYQGVLNRLITRHDTSKADPHGVWKTDIGLDNVDNFKTATLQETLEGLRDDLHITVNNAAQAIEITKVSNERLFPAGTLPLLRYGNDSFIPPKIDGSFEGMGGYNFRLGVVRESSGEMVALQHRNDGVVRGLYFLKCDDPYAKNPNWSYTSYRYIHPTAVADGANIDSVINGSGQYVLVIGDSVKGIWYWCETNGTLDPSKHVLKRISGDFINVNHGMGQSLTLLVDSDYADQWFIMGSMTNSEVKAARPDYPTSVETGGGDRSVEAMRFFSCIASSTAVNLCTVDFKEQDGKTPKDKIWMPYTRTVVSPNTITGYEAEYETPAITVWNYRGIQGMCKRTAVQREYAFRLYNYIYRIEKTTGLASGSRPVWKGTLKLDPVTNTVKVLPGPGEKRYRISIKPNDDTGVENDLFVNWKTSSLATLTDDVSRGYAEFDHNGNAIYVSPVVSGSLPGQVTLYKTDAPLTPERLIGARSDFDYVEVSKTPMPEVNPAGLAVGLTEPMSILGDTNRPETAIVLGTQLSMENGEIKIEWVGRPTPFMNPDWTGNTSLLQPITIGGVQVKGYPLTPETYTCSMGPYKFWSLHGFSVIPEVSSSVRERWTRSCGADGMANINGTPTSQTDFLFPKICRHEIVGREVRIIPVEVYNVESMLSGQIKTYLDGKGINTETIKMTWTMSPIYNRKGEERVLLMVSSRKPGDGLRDVEAIVMVGQLKGVGNPITKDGYKYYEHSTFDFGDKHHVGPALAAPSTGLAPGGPIHAWRAGFCVADINTGTTPGSADQTCIYLRTIHRYTIVGDTVPINLLIEMGNDFSITRSAVKPTGSSPYSASICASPGNTMGYISSNDVNLARGACVVAGGLRWGTSRFDILASADPGAGVEKRLLISNLLVSAFTVYFQAADNVLLGGRAYDVKATYIDIRDFDSNPANKTFYIYLRFAGGQPTYQIERAPTPETATSACVAVVKTGATRIETVVPYNRFLMNGVEISSKRRGAAILSPAGSIFDKGSLAPIISESDFLPG
Physico‐chemical
properties
protein length:1208 AA
molecular weight: 133390,21050 Da
isoelectric point:5,55757
aromaticity:0,09851
hydropathy:-0,24379

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010668865.1
1 1208
Domain Start End Length (AA) Confidence
N-terminal 1 264 264 0,9842
Central domain 265 618 355 0,8514
C-terminal 619 1208 589 0,3929
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-264
Central
265-618
C-terminal
619-1208

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D6
[NCBI] 		2593322 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D6 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668865.1 [NCBI]
Genbank nucleotide accession
NC_070958 [NCBI]
CDS location
range 112466 -> 116092
strand +
CDS
ATGAATAGAATTGACGTTCCTTTATATTCCTTGGATCTCACAGGAGAATCTCCTTTCAATAGGGTAACCAGGGAAGAAGGTGTTCGTTCAAGTAACCAGTTGGTTATACCTAACGCAGCACCTTTCTACATTGATTCCGTGACCATAACCCATGTGGACGGAACACCAATGGACCTCGGAAAGGACTATGACTTCTATGGGATCCTGGCAAATCTCACAGAGTACACGGCAAAGTCGGTCGGGCTTTACATTCGTTTCCTGAATGACGATATCAAGGAATGGATAGTTAGTTATAACACCGTAGGTAACTTCAACAAGATTACCACGGAAATTCTGAACATGCTCAAAGCGATCACGGAGGACGATCGACCGGTACACTGGGATAACATAGACAACAAACCACTCTGGTTCGTTCCCGAGCTCCACCAACATGATTACACGTTCCATTTCTTCGGGTTTAGTGACCTGGCGAGAGAACTGCTCCGTGTTCAGCAATACAGCGCCCTTTTCAATGACGGTGTCCAGACCGATCTGGACATGTTCAACATGCGCCTGGAGAGCTACATATCCGAATACCAGGGGGTGTTGAATCGGCTTATAACACGCCACGACACCAGTAAGGCCGACCCTCACGGCGTCTGGAAGACGGACATCGGTCTTGACAACGTGGACAACTTTAAGACCGCAACCCTCCAAGAAACCCTGGAAGGACTTCGTGACGATCTCCACATCACTGTCAACAACGCAGCACAGGCAATAGAAATTACTAAAGTTAGTAACGAGAGACTTTTCCCTGCCGGGACACTCCCTTTACTCCGTTATGGTAACGATAGTTTCATCCCCCCGAAAATAGACGGTTCCTTCGAGGGAATGGGTGGTTACAACTTTAGACTCGGTGTCGTACGTGAGAGTAGTGGGGAGATGGTCGCACTCCAACATCGCAATGATGGTGTGGTCCGCGGACTCTACTTCCTGAAGTGTGATGACCCTTATGCCAAAAATCCCAACTGGTCGTATACCAGTTATCGGTACATTCACCCGACGGCTGTTGCCGACGGTGCCAACATTGACTCTGTGATCAATGGTAGTGGCCAGTATGTGTTGGTGATTGGGGACTCGGTTAAAGGAATTTGGTACTGGTGTGAAACCAACGGGACCCTGGATCCCTCTAAACACGTGCTCAAACGCATCTCTGGTGATTTCATCAATGTCAATCACGGGATGGGTCAATCACTCACCCTACTGGTTGATAGTGATTACGCTGACCAGTGGTTTATCATGGGCTCCATGACTAATTCCGAAGTTAAGGCAGCTAGACCTGACTATCCCACATCAGTTGAAACAGGTGGTGGTGACCGTAGTGTAGAAGCAATGAGATTCTTCTCTTGTATTGCGTCATCTACAGCCGTGAATCTCTGCACTGTGGATTTCAAGGAGCAAGATGGTAAGACCCCTAAGGACAAAATCTGGATGCCTTATACCAGAACGGTGGTTTCTCCGAACACGATTACTGGTTATGAAGCGGAGTACGAAACTCCGGCAATAACGGTGTGGAATTACCGTGGCATTCAGGGCATGTGTAAAAGAACAGCGGTTCAGAGAGAATACGCATTCCGTTTGTACAACTATATCTATCGGATAGAGAAAACTACTGGTCTGGCTTCTGGTTCACGGCCTGTCTGGAAGGGAACATTGAAACTCGACCCGGTTACCAACACCGTAAAAGTACTTCCCGGTCCCGGTGAAAAACGATATCGGATCTCCATTAAACCGAATGACGATACCGGTGTTGAAAATGATCTCTTTGTAAACTGGAAGACAAGTTCTCTAGCCACGCTCACCGATGATGTTTCAAGAGGATATGCCGAATTCGACCATAACGGTAATGCGATATACGTATCTCCCGTTGTATCCGGATCGTTACCTGGGCAAGTGACCCTTTATAAAACAGACGCCCCACTCACTCCGGAAAGATTAATTGGTGCCAGGTCCGACTTTGACTATGTTGAAGTCAGCAAAACACCCATGCCGGAGGTTAACCCTGCTGGGTTGGCTGTTGGACTCACGGAACCAATGTCAATTCTCGGAGACACAAATCGCCCTGAAACGGCTATCGTTCTCGGTACTCAACTCTCTATGGAAAATGGAGAGATAAAAATAGAATGGGTTGGTCGCCCCACCCCGTTCATGAACCCTGACTGGACTGGTAACACTTCGTTACTCCAACCCATTACAATCGGTGGTGTTCAGGTTAAGGGGTACCCTCTGACACCGGAGACGTATACGTGTTCCATGGGACCGTACAAGTTCTGGTCTCTACACGGGTTCTCCGTGATACCAGAAGTTAGTAGTTCTGTAAGAGAACGCTGGACGAGGAGCTGTGGTGCCGATGGGATGGCGAACATCAATGGAACACCAACCTCCCAAACCGATTTCTTGTTCCCGAAGATTTGCAGGCACGAGATTGTTGGTAGGGAAGTCAGGATTATTCCCGTTGAAGTTTACAATGTCGAGAGTATGTTGTCCGGCCAGATCAAGACTTATTTGGATGGAAAGGGGATAAATACAGAAACCATCAAAATGACTTGGACGATGAGTCCCATTTACAACCGGAAGGGAGAAGAGCGTGTACTTCTCATGGTTTCCAGTCGCAAGCCAGGTGACGGACTTCGCGATGTAGAAGCTATCGTTATGGTGGGTCAATTGAAAGGTGTTGGTAATCCGATTACCAAAGATGGTTATAAATACTACGAACACTCTACATTTGACTTCGGTGACAAGCACCACGTCGGACCTGCTTTGGCCGCACCGTCCACAGGACTCGCTCCTGGCGGTCCAATCCATGCGTGGCGAGCAGGGTTCTGTGTGGCTGATATTAACACCGGAACTACACCCGGGTCCGCCGATCAAACTTGTATTTATCTCCGGACGATACATAGGTACACTATTGTCGGGGACACGGTTCCCATAAACCTGCTTATTGAAATGGGGAACGATTTCTCAATAACCAGGTCAGCGGTAAAACCAACAGGTTCGTCACCTTACTCGGCCAGTATTTGCGCTTCTCCTGGGAATACCATGGGATACATATCGTCTAACGACGTCAACTTGGCTCGTGGGGCGTGTGTGGTGGCGGGTGGACTCCGTTGGGGGACCAGTCGGTTTGATATCTTGGCCTCGGCCGATCCAGGTGCTGGCGTGGAGAAACGGTTGTTGATTAGTAACTTACTCGTTTCAGCCTTCACCGTTTATTTCCAGGCGGCTGATAACGTTCTGCTGGGTGGTAGAGCGTATGATGTAAAAGCAACCTATATCGATATTCGGGATTTTGATAGCAACCCAGCTAACAAAACCTTCTATATTTATCTTAGGTTTGCTGGCGGTCAACCGACCTACCAGATCGAACGAGCACCTACTCCGGAAACAGCGACAAGCGCTTGCGTTGCCGTTGTAAAGACTGGTGCTACCAGAATAGAGACGGTAGTTCCCTATAATCGATTCTTGATGAACGGAGTGGAGATCAGTAGTAAACGGCGAGGAGCGGCAATACTTTCCCCGGCCGGCAGTATCTTCGATAAGGGTTCTTTAGCGCCCATCATCAGTGAATCTGATTTCTTGCCAGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba44b44b9224b31e6039e5eec1b8b7c49c92beb8d0ae4d283ea03698c41b92af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3647
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D6 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank