Protein

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Genbank accession
YP_004323303.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSKIMKKFIPIIMLLTFGTAANAGGLSTRHQSSLQLTVEPQIVTQTRIGNSYSISGNNVITTHTPANGSAVDGGIGINTYSATTGVGTVGTITGVQNGCTGSSADDDLACAGSFSFAQSWQQGDNSSAAAASWGDITTQSAGTAGTGAPGTITNGHTITINQGTSSAGTLGAGNSLTGQFVSEITIFD
Physico‐chemical
properties
protein length:188 AA
molecular weight: 18741,36900 Da
isoelectric point:5,03476
aromaticity:0,05319
hydropathy:0,02234

Domains

Domains [InterPro]
IPR046285
STR
13–179
IPR046285
IPR046285
STR
13–165
IPR046285
YP_004323303.1
1 188
Architecture
STR
STR 13-179 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004323303.1
1 188
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0007
Central domain 11 177 168 0,0086
C-terminal 178 188 10 0,9914
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-177
C-terminal
178-188

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-RSM4
[NCBI] 		444862 Uroviricota > Caudoviricetes > Pantevenvirales > Thaumasvirus > Thaumasvirus stim4
Host Prochlorococcus marinus str. MIT 9303
[NCBI] 		59922 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004323303.1 [NCBI]
Genbank nucleotide accession
NC_015283 [NCBI]
CDS location
range 141649 -> 142215
strand -
CDS
ATGAGTAAAATAATGAAGAAATTTATTCCTATCATTATGCTTTTGACGTTCGGCACAGCAGCAAATGCGGGCGGACTATCGACTAGACACCAATCTAGTTTACAACTAACTGTTGAACCTCAAATCGTGACTCAGACACGAATTGGCAATAGCTATTCGATCTCTGGAAATAACGTGATCACAACACATACACCTGCCAATGGTAGTGCTGTAGATGGTGGTATCGGTATTAACACTTATAGTGCTACTACAGGTGTTGGAACAGTTGGAACAATTACTGGTGTTCAAAATGGATGCACAGGATCATCTGCAGATGATGACCTAGCATGTGCAGGATCATTCTCCTTTGCCCAATCATGGCAACAGGGTGACAATTCTTCTGCAGCAGCTGCTAGTTGGGGTGATATCACCACACAAAGTGCAGGAACAGCAGGAACAGGTGCACCAGGAACAATCACAAATGGTCATACTATTACGATTAATCAGGGCACAAGTTCAGCAGGAACTCTCGGTGCAGGTAATTCATTGACAGGTCAGTTTGTTAGCGAAATTACTATTTTTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f60453541e8635de28480df591f7ed7ebd8c63c1668619622cb42e6b2c39882
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3722
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 9303-10a Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank