Protein

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Genbank accession
YP_010659407.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSTGIFQRPNVDQHGYLLPMRIDGTPAEYTLGDPYEGRLQVHNNVGACTIQQTGGDELPNGHSISFDPDTNEIVIAWPALFWIDPVTKIYAAEILDPGFESGSAKKGWEMGLGWSVNNINNITGSYSACFMDFNGSSHIVNKARHKVEPGNVINAQCTVRQGASAKYNVGALVTIQYFDDKGNMIHIDRGNLVDDASKNRVYPSRLASTVPAGAVTCSIGCEGVRFKENKELFVDDFKWDLQVTEIIESQNPLNEYNVELTATDSIGRIARWNGQIKMAGVYVTSKLYGFYDYESLGLSADFVEFRRQEMEMEISPFLVGAQFISLDLRTLRQDYTHPAEDILSLGSSFVGITIRQIRKDYNHEFDPDDGLQLGCSYVSLNIKQHPRVDQPQEDSLTLSAAFVSLEFGS
Physico‐chemical
properties
protein length:409 AA
molecular weight: 45483,39940 Da
isoelectric point:4,81286
aromaticity:0,10024
hydropathy:-0,29731

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010659407.1
1 409
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,4355
Central domain 213 398 187 0,0888
C-terminal 399 409 10 0,3197
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-398
C-terminal
399-409

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage Paxi
[NCBI] 		2859653 Uroviricota > Caudoviricetes > Schitoviridae > Pokkenvirus paxi >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010659407.1 [NCBI]
Genbank nucleotide accession
NC_070867.1 [NCBI]
CDS location
range 67091 -> 68320
strand -
CDS
ATGAGCACTGGTATCTTCCAGCGCCCGAATGTCGATCAGCATGGGTACTTGCTACCCATGCGGATTGATGGCACCCCTGCTGAGTACACGCTAGGTGATCCTTACGAGGGTCGTCTGCAAGTGCACAACAATGTGGGGGCATGCACTATCCAACAGACCGGAGGTGATGAACTTCCGAATGGTCACTCCATCTCGTTCGATCCAGACACGAACGAGATCGTGATTGCATGGCCTGCACTCTTTTGGATTGATCCAGTCACCAAGATCTATGCAGCAGAAATTCTTGACCCCGGCTTCGAAAGTGGTAGTGCGAAGAAGGGTTGGGAGATGGGTCTTGGCTGGTCGGTGAACAACATCAACAACATCACTGGCAGCTACTCGGCTTGCTTCATGGACTTCAATGGCTCCAGCCATATCGTCAACAAAGCACGTCACAAGGTAGAGCCGGGCAATGTCATCAACGCACAATGCACCGTGCGTCAGGGTGCATCTGCCAAGTACAATGTTGGTGCGCTTGTCACCATCCAGTATTTCGATGACAAGGGGAACATGATTCATATCGACCGGGGCAACCTTGTCGATGATGCTTCGAAGAATCGTGTATACCCGTCACGTCTAGCATCGACTGTTCCTGCCGGTGCTGTGACCTGTTCGATTGGCTGTGAAGGTGTTCGATTCAAAGAGAACAAGGAACTGTTTGTCGATGACTTCAAGTGGGATCTGCAAGTCACTGAGATCATCGAATCGCAGAACCCTCTCAATGAGTACAACGTTGAGTTGACTGCAACAGATTCCATTGGACGTATTGCTCGATGGAATGGTCAGATCAAGATGGCCGGTGTCTATGTCACCAGTAAGCTGTATGGCTTCTATGACTATGAATCTCTTGGCCTCTCCGCTGACTTCGTTGAGTTCCGCCGACAAGAAATGGAAATGGAAATTTCCCCCTTCTTGGTCGGTGCTCAGTTCATCTCGCTGGATCTTCGGACCCTTCGGCAGGACTACACTCACCCGGCTGAAGACATCCTTTCCCTTGGTTCCAGCTTCGTCGGCATCACGATTCGGCAGATCCGAAAGGATTACAACCATGAGTTCGACCCGGATGATGGTCTGCAACTTGGTTGTTCCTATGTCTCTTTGAACATCAAACAACATCCTCGTGTGGATCAACCACAAGAAGATTCCCTTACACTCTCTGCTGCCTTCGTCTCTCTGGAGTTCGGTTCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1cbe696b5b17377625fe5b5d61caae2e0ea22a0f285ce69cb8ce84a93b8e9d82
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6959
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Stenotrophomonas maltophilia phage Paxi Jeon,E., Hudson,A., Talcott,A., Clark,J., Liu,M. and Burrowes,B. 2022-04-21 — GenBank