Protein

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Genbank accession
YP_002225028.1 [GenBank]
Protein name
gp117
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSILYPGTPEAPAFDTFHVPTLPEDTPLAQAGPGNDRNLTESIEDLGDAVEQLERGASFRDHDHSGDSTHIRKGSKLKAVNTHEEVLVDAPGAIHRTVGPGQHQAAAGNHTHDYDGGSILNVPFKICTSNTRPGQPVEGMVIYEKDTKAFRQWALFANNVVVDGFNTLYEFDTVSTLGVGGTGWTQSYSGNDTKGKMTTPAGALVWVDNGNERNRSWARRAETTQTDDQVFTWMTGSTVIEETLLFTESASNDWYFRVSADEQSYLRLIVGNDWVAVNWTSTGRANEKELGRLNNINTDIPNTQWRAQMVGRELQIFRAGELLGTIKDTQNVTSKGANFRGFMIGMEAGVRGFGQTTPGHILWWRVQDLRYYQSTNRWTLLPLGATPVTRLRQSKTQKLFSTGTILEFAEELEDNFGYFDKNVSQTDVVVKEPGMYRVEAALQWDPQFAPDQAHVVVLINGLETTVRDSKYIRGSGFTPGFSQTLSLAAPIRLAVNDVVTIKAYYTAGNSIIDKIFSFFDSNSKVNSRLDLTYTGP
Physico‐chemical
properties
protein length:536 AA
molecular weight: 59416,39760 Da
isoelectric point:5,33385
aromaticity:0,09888
hydropathy:-0,43172

Domains

Domains [InterPro]
IPR055681
STR
141–372
IPR055681
IPR055681
STR
155–372
IPR055681
DC_1463
RBD
340–536
DC_1463
YP_002225028.1
1 536
Architecture
STR
RBD
STR 141-372 | RBD 373-536
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_002225028.1
1 536
Domain Start End Length (AA) Confidence
N-terminal 1 231 231 0,6263
Central domain 232 430 200 0,0581
C-terminal 431 536 105 0,9989
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-231
Central
232-430
C-terminal
431-536

Taxonomy

  Name Taxonomy ID Lineage
Phage Mycobacterium phage Myrna
[NCBI] 		546805 Uroviricota > Caudoviricetes > Ceeclamvirinae > Myrnavirus myrna >
Host Mycobacterium sp.
[NCBI] 		1785 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales
Host Mycobacterium smegmatis str. MC2 155
[NCBI] 		246196 Bacteria > Actinobacteria > Actinobacteria > Corynebacteriales > Mycobacteriaceae > Mycobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_002225028.1 [NCBI]
Genbank nucleotide accession
NC_011273 [NCBI]
CDS location
range 65019 -> 66629
strand +
CDS
GTGTCGATTCTGTATCCGGGCACCCCGGAGGCTCCGGCGTTCGACACGTTCCACGTGCCGACCCTGCCGGAGGACACGCCGCTGGCCCAGGCCGGTCCGGGCAACGACCGCAACCTCACCGAGTCGATCGAGGACCTCGGTGACGCGGTGGAGCAGCTGGAGCGTGGCGCGAGCTTCCGCGACCACGACCACAGCGGCGACAGCACGCACATCCGCAAGGGCAGCAAGCTCAAGGCGGTCAACACCCACGAGGAGGTCCTGGTCGACGCGCCTGGCGCGATCCACCGGACCGTAGGCCCAGGCCAGCACCAGGCCGCTGCGGGCAACCACACCCACGACTACGACGGCGGCTCGATCCTCAACGTGCCGTTCAAGATCTGCACCAGCAACACCCGACCCGGCCAGCCGGTCGAGGGCATGGTGATCTACGAGAAGGACACCAAGGCCTTCCGGCAGTGGGCGCTGTTCGCCAACAACGTCGTGGTCGACGGCTTCAACACCCTCTACGAGTTCGACACCGTGTCGACGCTCGGCGTCGGCGGCACGGGCTGGACCCAGAGCTACTCGGGCAACGACACCAAGGGCAAGATGACCACCCCGGCGGGCGCGCTGGTGTGGGTCGACAACGGCAACGAGCGCAACCGCTCGTGGGCACGTCGCGCCGAGACCACCCAGACCGACGACCAGGTGTTCACCTGGATGACCGGCTCGACGGTGATCGAGGAGACGCTGCTGTTCACCGAGAGCGCGTCCAACGACTGGTACTTCCGCGTCAGCGCCGACGAGCAGTCCTACCTCCGGCTCATCGTCGGCAACGACTGGGTGGCGGTCAACTGGACCTCCACCGGTCGGGCGAACGAGAAGGAGCTGGGTCGCCTCAACAACATCAACACCGACATCCCGAACACGCAGTGGCGTGCGCAGATGGTCGGTCGCGAGCTGCAGATCTTCCGCGCTGGCGAGCTGCTCGGCACGATCAAGGACACCCAGAACGTCACCAGCAAGGGCGCGAACTTCCGAGGCTTCATGATCGGCATGGAGGCCGGTGTGCGCGGCTTCGGCCAGACCACGCCAGGCCACATCCTGTGGTGGCGCGTGCAGGACCTCCGGTACTACCAGAGCACCAACCGCTGGACCCTGCTGCCGCTGGGAGCCACGCCGGTCACCCGGCTGCGCCAGTCCAAGACGCAGAAGCTGTTCAGCACCGGCACGATCCTGGAGTTCGCCGAGGAGCTGGAGGACAACTTCGGCTACTTCGACAAGAACGTCAGCCAGACCGACGTCGTGGTCAAGGAACCGGGCATGTACCGGGTCGAGGCCGCGCTGCAGTGGGACCCGCAGTTCGCCCCGGATCAGGCCCACGTCGTGGTGCTGATCAACGGTCTGGAGACCACCGTCCGGGACAGCAAGTACATCCGAGGCTCCGGCTTCACGCCAGGCTTCTCGCAGACGCTGAGCCTGGCCGCGCCGATCCGCCTGGCCGTCAACGACGTCGTGACGATCAAGGCCTACTACACCGCCGGTAACAGCATCATCGACAAGATCTTCTCGTTCTTCGACAGCAACTCCAAGGTGAACAGCCGACTCGATCTGACCTACACGGGACCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b47eaa7d6963c3d80923aeaf5d4c37bf183f3ff927e075f9fa108058a6a3f7c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7129
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50