Protein

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Genbank accession
YP_010658349.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MVTRTIDDLPVASSEAIALGTLLLSDANGIEFRATTAVIGGVHLFFQDEDDLTPVVRGRLTSPGRTVENILVTLTATSNTTGLVVTKTTTTNDTGNWSYDFTTSLARNDTYTIEAKVDVYLTATTTKAIASLSTLNSPLIATSTAKVGDTITVDEPDFSGSPSEIRYRYLRGPNYVIPGAHASVYTLVADDDADIITPQVQAVNAGGESQWFSANTIGPVSNKTSVLLTNPVIAADGTLGGRATVTSPGSASENATIKSDEWLLDNATIPSVKGAAVRYLAGQANGTDPTAYPDGSNHNGVPLTTSMYTGSNTYSFSVAPNFVSENDYIPFLMGAAGGNEGSQVFDIYIKHLSTNSALRFKMFAGKYRNNVLVEEVQMSKVGAAAGQELNDLAATAQAVNHWTLNHDFGEWLEGDYLVFRQKVYNTSPSSSNNYQWDARSGASYASLPIGPVQGIQKSISTFTSNASMAGKKLRLKRTFTNRNNEVVSNSNEITLEAATTQTFAPTNLTAPTIVAKSDRSNTVWYVDLGAWNHQPSSFTAQWVDNGVDIAGATNLLYTPPSSLEGHTITCRVTATNDVGSASVSTTGKTVLPAAVYYNAATGNDANDGLTEETAKQTTTGSQSIPSGATAIIMEDTGARLLLGSNRSYQGQASGSVIPSIGALNVNSAVDQYTDGYQSISNIALRNLRILSGDRGITQRQGSNWTLEDLILENVGWTPAVSAENCQGMFFYNMTGLTIRRCAFNFINSDALYIDTCNHVLVEDSTFLPVFTAEGDTIQTRADRTVNGAPGPHQRGFILRRSTLDMHSRKTASGKGDLVTNSQDYKLLADCTFLGNNFSVATDEGDNHACYRCDFSYGRKNSYSSAYSIGGYDNEPSSHNHVLYDNRIYDYNRALSWTGISVTGYTGAKAGRVDVQVYDQTIVKCATGMRIDRPTSGIFMGFVFHNVTKVLDRALTTLPSDNQLGFVWGPHYTYNGAIQNPPPVTTRATISGTREVGEILSGDDAVFDTSEVLTAFPSAVITRSYQWRRHKPMPKIAAWNQHMGWSCEYIDGATDSDYTIQTEDQGCRLSRVDRIHLTFTEAGVTKVVTAIAYDGTYPTSSEVLRTGDLATALPVLVTSGGVLSAAAVEGTIVLDFPALITGETRTLLNPSRAYDPYTGTAYSIDVNGDLVKGADPAVVSGNTYSITVRQQRGIDVVDYRISIVASA
Physico‐chemical
properties
protein length:1206 AA
molecular weight: 129471,08860 Da
isoelectric point:5,08183
aromaticity:0,08458
hydropathy:-0,21128

Domains

Domains [InterPro]
DC_1007
ATT
112–254
DC_1007 G3DSA:2.60.40.2700 DC_2223 DC_0572
DC_0400
STR
219–601
DC_0400 G3DSA:2.60.40.2700
IPR011050
STR
589–948
IPR011050
YP_010658349.1
1 1206
Architecture
ATT
STR
RBD
ATT 112-254 | STR 255-948 | RBD 949-1206
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010658349.1
1 1206
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,8589
Central domain 231 429 200 0,8346
C-terminal 430 1206 776 0,1329
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-1206

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHEph16
[NCBI] 		2836132 Uroviricota > Caudoviricetes > Schitoviridae > Acanvirus > Acanvirus Rheph16
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010658349.1 [NCBI]
Genbank nucleotide accession
NC_070856 [NCBI]
CDS location
range 14269 -> 17889
strand +
CDS
ATGGTTACCCGAACTATTGATGACCTTCCTGTGGCGTCTTCTGAGGCAATTGCCTTAGGTACGCTGCTTCTTTCAGATGCAAATGGTATTGAATTTAGAGCAACTACCGCTGTTATCGGCGGTGTTCATCTATTTTTTCAAGATGAGGATGATCTGACACCTGTCGTCCGTGGACGATTGACGAGTCCTGGCAGGACCGTAGAAAATATCCTTGTCACTCTTACAGCAACATCCAATACTACCGGTTTGGTTGTCACTAAGACCACGACTACCAATGATACAGGCAATTGGTCTTACGATTTCACAACCTCCTTGGCTCGTAACGATACGTACACCATTGAAGCTAAGGTAGATGTGTATCTCACTGCTACGACCACCAAAGCCATTGCATCTTTGAGTACCCTCAATAGCCCACTTATAGCTACGTCTACAGCTAAAGTAGGGGACACTATTACGGTTGATGAACCAGATTTCAGCGGTAGCCCATCAGAGATTCGCTATCGATACCTTCGTGGACCAAACTATGTAATCCCAGGTGCACATGCTAGTGTTTATACCTTGGTAGCGGATGATGATGCAGACATTATCACCCCACAAGTTCAAGCAGTTAATGCTGGTGGAGAGAGCCAATGGTTCTCAGCTAACACCATTGGTCCTGTTTCTAATAAGACGTCTGTGCTGCTTACGAATCCGGTAATTGCCGCAGATGGTACGTTGGGAGGCAGAGCTACTGTTACCTCTCCTGGTTCAGCTTCTGAAAACGCTACCATTAAAAGCGATGAATGGTTGCTCGATAACGCTACAATCCCTTCTGTGAAGGGAGCTGCTGTACGTTATCTAGCAGGACAGGCTAATGGTACAGATCCGACCGCATACCCTGATGGTAGTAACCATAATGGTGTTCCTCTAACCACTTCTATGTACACCGGAAGCAATACATACAGCTTCTCGGTAGCACCCAATTTCGTTAGTGAAAATGACTACATTCCATTCCTGATGGGTGCAGCAGGAGGTAATGAAGGCTCCCAGGTATTCGATATTTATATCAAGCATCTGAGCACAAACTCAGCTCTTCGTTTCAAGATGTTTGCTGGCAAGTACCGAAACAACGTGCTTGTAGAGGAAGTCCAAATGTCCAAGGTGGGGGCAGCAGCAGGACAAGAACTTAATGACCTTGCTGCTACCGCACAGGCGGTGAACCATTGGACACTGAACCATGATTTTGGTGAATGGTTGGAAGGTGATTACCTCGTCTTCCGTCAAAAAGTATATAATACGTCTCCATCCTCATCCAACAATTACCAATGGGATGCTCGTTCGGGTGCTAGTTACGCATCTCTTCCTATTGGTCCTGTGCAAGGCATTCAAAAGAGCATTAGCACTTTCACCAGCAATGCCAGCATGGCAGGTAAGAAGCTTCGTCTGAAGCGTACTTTTACCAATAGAAACAATGAGGTTGTTTCTAACAGCAACGAAATCACCCTAGAAGCTGCTACCACACAGACGTTTGCCCCAACGAACCTCACTGCACCAACCATTGTTGCCAAGAGTGATCGTAGCAATACGGTATGGTATGTAGATTTGGGTGCCTGGAATCATCAACCATCCAGCTTTACTGCTCAATGGGTAGATAATGGTGTTGATATCGCAGGAGCTACCAACCTGCTGTATACACCTCCTTCCTCTCTGGAAGGGCATACGATCACTTGCCGTGTTACAGCGACCAATGACGTAGGATCTGCTTCCGTCTCTACGACAGGTAAGACAGTTCTTCCAGCAGCAGTATACTACAATGCTGCTACAGGTAATGACGCTAACGATGGTCTAACTGAAGAGACTGCTAAGCAAACTACCACAGGGTCGCAGTCAATTCCTTCTGGTGCTACTGCCATTATTATGGAAGATACTGGAGCACGTCTCCTCCTTGGTTCGAATCGTTCTTACCAAGGACAGGCTTCAGGATCTGTTATTCCTTCTATTGGCGCCCTTAACGTTAACAGTGCTGTTGATCAATATACTGATGGTTATCAGTCTATTTCAAACATAGCTCTTAGAAACCTCCGTATTCTGTCTGGTGATCGTGGTATCACCCAAAGGCAGGGTAGCAATTGGACCCTTGAAGATCTCATCCTTGAGAACGTTGGATGGACTCCAGCAGTATCTGCGGAGAACTGCCAAGGCATGTTCTTCTACAATATGACCGGTCTCACGATTCGTCGTTGTGCATTCAATTTTATTAATTCGGATGCACTCTACATCGATACGTGTAACCACGTTCTTGTAGAGGACTCCACCTTCCTGCCTGTATTTACAGCAGAAGGTGATACTATCCAGACGAGAGCTGATCGTACTGTTAACGGTGCTCCTGGTCCTCACCAGAGAGGTTTTATCCTTCGTAGATCCACCTTGGATATGCATTCTCGAAAGACTGCTTCAGGTAAGGGGGATCTTGTTACCAACTCCCAAGATTACAAACTCCTCGCTGATTGTACCTTCCTCGGGAACAACTTCTCTGTTGCTACAGACGAAGGAGACAATCATGCCTGCTACAGATGCGATTTTAGCTACGGTAGGAAGAATTCTTACAGCAGTGCCTACAGTATCGGTGGGTATGATAATGAACCTTCATCCCATAACCACGTTCTCTACGATAACCGTATCTATGATTATAACCGTGCTCTTAGCTGGACTGGTATCAGTGTAACTGGATATACTGGAGCCAAGGCAGGTAGGGTTGATGTTCAGGTTTATGACCAAACCATTGTCAAATGCGCTACGGGTATGCGTATTGACAGACCTACCTCAGGTATCTTTATGGGATTCGTTTTCCATAACGTAACCAAGGTTCTAGATCGTGCCTTGACAACCCTTCCTTCTGATAACCAACTTGGTTTTGTCTGGGGACCTCATTACACTTACAATGGTGCTATCCAGAACCCCCCACCTGTAACTACTCGTGCTACGATCTCTGGAACCAGGGAGGTAGGAGAAATCCTGTCTGGTGATGATGCTGTCTTTGACACATCAGAAGTTCTGACTGCATTCCCCTCTGCTGTGATCACCAGAAGCTATCAATGGCGTAGACATAAGCCTATGCCCAAGATTGCTGCTTGGAACCAACATATGGGTTGGTCCTGTGAGTATATTGATGGTGCTACGGATTCTGACTACACCATCCAAACAGAAGACCAAGGATGCCGTCTGAGCCGTGTAGATCGTATCCACCTGACTTTTACCGAAGCTGGTGTTACCAAGGTTGTAACGGCAATTGCTTATGATGGTACTTATCCTACTTCTTCTGAAGTACTCCGTACAGGCGATCTCGCAACTGCTCTCCCTGTACTGGTTACATCTGGTGGGGTACTCTCTGCTGCTGCTGTAGAAGGTACTATTGTTCTTGACTTCCCTGCTTTGATTACAGGTGAAACAAGAACACTTCTTAATCCTAGCAGAGCATATGATCCTTATACCGGAACTGCTTATTCCATTGATGTTAATGGGGATCTCGTTAAAGGAGCAGATCCAGCAGTAGTTAGTGGTAACACTTACTCTATAACTGTTAGACAGCAACGCGGTATAGACGTTGTAGATTACAGAATCTCAATCGTTGCATCTGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a9bc4185871fe6c7b2bb132d31238688874115e968d965707da744ea5699c350
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2715
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Hidden Diversity of Double-Stranded DNA Phages in the Symbiotic Bacterium Rhizobium Santamaria,R.I., Bustos,P., Cauwenberghe,J.V. and Gonzalez,V. 2011 — GenBank