Protein

View in Explore
Genbank accession
AYP68729.1 [GenBank]
Protein name
collagen triple helix repeat containing protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MINTDNFVQLIESLINKKMVKAMSLGTIQHDYASGRPRIIFDGENTASGKRYRHLSSYNPKAGDRVLMANIGGTHVILGKIGDYEGGTGGDGGGTVSGALDFTWDGTRLGVKQPEESSFQFVDLKGERGPQGDRGQQGDTGPIGPIGPKGDTGDRGPVGPKGDTGEQGPQGPQGLKGDKGDTGSQGPQGIQGPRGFTGEEGPKGETGSQGPTGPVGPKGDKGDTGAVGPQGPTGDRGPQGLTGPKGDKGDQGPEGPQGETGLQGPAGPQGPTGDTGPTGPVGPRGEVGPQGPQGVEGAVGPKGDQGPQGDKGDKGDRGDSGVTTPSSGWFTLAGDEEGNLYALHTDPNHPPSFEVDSNNNIYYVIPEE
Physico‐chemical
properties
protein length:368 AA
molecular weight: 37231,88040 Da
isoelectric point:4,77717
aromaticity:0,04620
hydropathy:-0,93261

Domains

Domains [InterPro]
DC_2281
ATT
1–120
DC_2281 IPR008160 DC_0341
IPR050149
Unmapped
116–322
IPR050149
IPR008160
STR
126–180
IPR008160 IPR008160
DC_1341
STR
167–240
DC_1341
AYP68729.1
1 368
Architecture
ATT
STR
STR
ATT 1-120 | STR 121-240 | STR 243-359 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bacillus phage vB_BpsS-36
[NCBI] 		2419622 Uroviricota > Caudoviricetes > Ehrlichviridae > Nairobivirus nv36 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP68729.1 [NCBI]
Genbank nucleotide accession
MH884513 [NCBI]
CDS location
range 20014 -> 21120
strand +
CDS
ATGATTAATACTGATAACTTTGTACAGCTCATAGAGAGCTTAATTAATAAGAAGATGGTTAAGGCTATGAGCCTTGGTACTATTCAGCATGATTATGCAAGTGGGAGACCACGTATAATCTTTGATGGTGAGAATACAGCTTCTGGTAAGCGATACAGACACCTCTCAAGCTATAACCCTAAAGCTGGTGACAGAGTGCTTATGGCTAATATTGGTGGTACTCATGTAATACTGGGTAAGATTGGTGACTATGAGGGTGGCACTGGAGGAGATGGTGGTGGTACTGTTTCTGGTGCTCTTGACTTCACTTGGGATGGTACACGCTTGGGAGTTAAACAGCCAGAAGAAAGCTCCTTCCAGTTTGTTGACTTGAAAGGTGAAAGAGGTCCACAAGGAGACAGAGGACAGCAAGGAGACACTGGTCCAATAGGTCCAATAGGTCCAAAGGGTGACACTGGTGATAGAGGTCCAGTAGGACCAAAAGGAGACACTGGTGAGCAAGGACCACAAGGACCTCAAGGCTTAAAGGGTGACAAGGGAGATACTGGCTCACAAGGTCCTCAAGGTATTCAAGGTCCAAGAGGTTTTACTGGTGAGGAAGGTCCAAAAGGTGAGACTGGTTCACAAGGTCCAACTGGTCCAGTAGGTCCAAAAGGAGATAAAGGAGACACTGGAGCTGTTGGTCCTCAAGGTCCTACTGGTGATAGAGGTCCACAAGGTTTAACTGGACCAAAAGGAGACAAAGGAGACCAAGGTCCAGAAGGTCCTCAAGGGGAGACTGGCTTACAAGGTCCAGCTGGTCCACAAGGTCCGACTGGTGACACTGGTCCAACTGGTCCAGTAGGTCCAAGAGGAGAGGTAGGTCCTCAAGGTCCTCAAGGGGTTGAGGGTGCTGTTGGTCCAAAAGGTGACCAAGGTCCACAAGGAGACAAAGGTGATAAGGGTGACAGAGGTGACTCTGGTGTGACAACTCCTTCCTCTGGGTGGTTTACACTCGCTGGAGATGAAGAAGGTAACTTATACGCTCTTCATACTGACCCTAACCACCCTCCAAGCTTTGAAGTGGACTCTAATAATAATATCTATTATGTAATACCAGAGGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d4153f6ff4d5426923e71e5aa4e0f3df2be0bfc3e2712d2c0971d9db7aca63c0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6785
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative Genomic Analysis of Eight Novel Haloalkaliphilic Bacteriophages from Lake Elmenteita, Kenya Akhwale,J.K. — — GenBank