Protein

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Genbank accession
ADE43462.1 [GenBank]
Protein name
gp38
RBP type
TSP
Evidence RBPdetect
Probability 0,57
Protein sequence
MALFPLDIRTELKLGATWMDISSDVLQRDVKNITRGVRDQGSTADPASLSLTLNNRSGKYSVRNAESPLYGLIGRNTQVRLSVPTTGDSYLNLDGLAGNFASTPDVAALNITGDLDVRIEMAPNWYGAENQVVIGKWAPGQASWMVQVYNGTVIFRYTTTGTEPSPTLAYTRPLPTLPERAALRVTLDVDDGSGNHVTTFYWAPTLAGPWTPIGNPAPYAGTAPMFAGSAPLRIGLDDFRPNTTTPRLPMVGRVYRAEVRSGIDGTIVASPDFRGLADRTTSFTDSSGRSWSTVGGAEIRHREDRFVGEISTWPLKWTADASDIWTSVRAAGILHRLGQGTKDLDSTLRRRIPSGKPIAYWPMEDASDATRAYSPIPGVQPASVSGVEWAAAGDLPSSNPLPVLGQAGNLTAPIPGTMPSGEWQVEFVYNADDKAPPYPGEEAPFIAASSPNGAVRRWEISMQRTRVHIRGYNAGGTALVGIYMGAGDDIFHGWTRLRLYAKDQGDGTFIWRIAFQDVGGDAGGISGTVTGSCGRLSAVTANWGPLTEGWSIGHLTVLPVAGSGLMNGSDDAFSGESAWDRLARLGREEGLSIGRIPGQLPPQRVGPQRPAKLIDLLESVADSDGGWLTESPRRVGLTYRDRSSAYGQEPALTLSYIAPGLSDGLEPVDDDSAIRNDITVTRDGGSSARAYEASGPLSVLPPPNGIGIYDEGVTLSLSDDTQPEPIANWRLHLGTFDGARYPVVTVTLHKTGAEGLLPQVLGLREGDVIRLTNLPKWLSHADVDLIVMGWTESLELYRWTIEFNCLPGGPWDTAKVNVVHEDFEDDNYAIPLAAAGSLPWVRSTAHAHTGTSALKSGAITNNQTSDAVLSLPAGVTELSFWYFTNSENFGTGFTGDYLTVLADGVEVLRAQGSTPWTKKTLNVTGVSTIVFRYRKDNSAASGEDAVWIDNLRMVYGTYRAAKVQTDGSTLTAPVNATATSLTVASPAAPWTTNPIDLPIPITVDGEVMSVTAINVDTSPQIFTVTRSVNGVSKSHLAGASVTLARPAVAPL
Physico‐chemical
properties
protein length:1051 AA
molecular weight: 112330,43360 Da
isoelectric point:5,08450
aromaticity:0,07992
hydropathy:-0,19134

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ADE43462.1
1 1051
Domain Start End Length (AA) Confidence
N-terminal 1 389 389 0,3794
Central domain 390 588 200 0,3949
C-terminal 589 1051 462 0,3484
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-389
Central
390-588
C-terminal
589-1051

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage phiSASD1
[NCBI] 		747763 Uroviricota > Caudoviricetes > Sasdunavirus >
Host Streptomyces avermitilis
[NCBI] 		33903 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Kitasatosporales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADE43462.1 [NCBI]
Genbank nucleotide accession
GQ379227 [NCBI]
CDS location
range 11644 -> 14799
strand +
CDS
GTGGCACTCTTCCCGCTGGACATCCGCACTGAACTTAAGCTGGGCGCCACCTGGATGGACATCAGCTCCGATGTCCTCCAGCGTGACGTCAAGAACATCACGCGCGGTGTCCGTGACCAGGGTTCAACCGCGGACCCCGCATCACTGTCCCTCACTCTCAACAACAGGTCTGGCAAATACTCCGTCCGCAACGCGGAGTCCCCGCTGTACGGCCTGATCGGACGCAACACCCAGGTCCGCCTCTCCGTCCCCACCACGGGCGACAGTTACCTGAACCTGGACGGCCTGGCGGGCAACTTCGCGTCGACTCCTGACGTCGCTGCCCTGAACATCACGGGTGACCTTGACGTTCGGATCGAGATGGCCCCCAACTGGTACGGGGCCGAAAACCAGGTCGTGATTGGCAAGTGGGCTCCTGGCCAAGCCAGTTGGATGGTGCAGGTCTACAACGGTACCGTTATATTCCGCTACACGACTACGGGCACGGAGCCTTCGCCCACGCTTGCCTACACGCGCCCTCTGCCCACCCTCCCCGAGCGCGCCGCACTGCGCGTCACGCTGGACGTGGACGACGGTTCGGGCAACCACGTGACCACGTTCTATTGGGCCCCGACGCTGGCCGGCCCGTGGACCCCGATCGGCAACCCTGCCCCCTACGCAGGTACGGCGCCTATGTTCGCCGGAAGTGCTCCTCTCCGCATCGGACTGGACGACTTCCGTCCCAACACCACCACTCCGCGACTTCCCATGGTCGGTCGTGTGTACCGCGCTGAGGTCCGGAGCGGCATTGACGGCACGATCGTGGCGTCCCCCGACTTCCGCGGCCTGGCCGACAGGACGACGTCGTTCACGGACTCCAGCGGCCGGAGCTGGTCCACGGTGGGCGGTGCTGAGATCCGTCACCGCGAGGACCGGTTTGTGGGAGAGATTTCCACCTGGCCCCTGAAGTGGACCGCGGATGCGTCGGACATCTGGACGTCCGTCCGTGCCGCCGGCATCCTCCACCGCCTGGGACAGGGCACGAAGGACCTGGACTCCACGCTGAGGCGCCGGATCCCGTCGGGCAAGCCGATCGCGTACTGGCCCATGGAGGATGCGTCCGACGCAACGCGCGCGTACTCCCCGATTCCTGGCGTCCAGCCGGCCTCTGTGTCTGGCGTGGAGTGGGCAGCCGCCGGGGACCTCCCGTCCAGCAACCCTCTTCCGGTCCTGGGCCAGGCGGGCAACCTGACCGCTCCCATTCCGGGCACGATGCCCTCCGGGGAGTGGCAAGTCGAATTCGTCTACAACGCTGACGACAAGGCCCCGCCGTACCCGGGCGAAGAGGCGCCGTTCATCGCTGCCAGCTCCCCGAACGGAGCCGTCCGCCGCTGGGAAATCAGCATGCAGCGCACGCGCGTACACATCCGCGGGTACAACGCTGGCGGCACAGCGCTGGTCGGCATCTACATGGGCGCCGGAGATGACATCTTCCACGGCTGGACACGCCTCCGCCTGTACGCGAAGGACCAGGGAGACGGCACCTTCATCTGGCGGATCGCCTTCCAGGATGTTGGCGGCGACGCGGGCGGTATTAGTGGAACGGTGACCGGGTCGTGTGGCCGTCTGAGTGCGGTCACCGCCAACTGGGGCCCTCTCACGGAGGGTTGGTCCATCGGCCACCTGACTGTCCTGCCGGTAGCGGGTAGCGGCCTGATGAACGGCTCGGATGACGCCTTCAGCGGCGAGTCTGCGTGGGACCGCCTGGCCCGCCTGGGCAGAGAAGAGGGACTGTCCATCGGGCGTATCCCTGGCCAGCTCCCGCCCCAGCGCGTCGGACCCCAGCGGCCCGCCAAGCTGATTGACCTCCTGGAATCCGTCGCTGACTCTGATGGCGGCTGGCTCACGGAGTCGCCCCGCCGCGTGGGCCTGACCTACCGGGACCGGTCCAGCGCGTACGGCCAGGAACCTGCCCTGACCCTCTCCTACATCGCGCCTGGCCTCTCCGATGGCCTGGAACCTGTCGACGATGACAGCGCCATCCGCAATGACATCACTGTCACCCGTGATGGCGGCTCCTCCGCCCGCGCGTATGAGGCGTCTGGCCCGCTGAGTGTCCTGCCTCCTCCGAACGGCATCGGGATCTACGACGAAGGCGTAACGCTGTCGCTGTCTGACGACACCCAGCCGGAGCCGATCGCGAACTGGCGCCTCCACCTGGGCACGTTCGATGGTGCCAGGTACCCGGTCGTCACGGTCACGCTGCACAAGACTGGCGCGGAGGGCCTTCTCCCCCAGGTCCTGGGCCTGCGTGAGGGCGACGTGATCCGCCTGACGAACCTGCCTAAGTGGCTGTCACACGCGGACGTGGACCTGATCGTCATGGGCTGGACCGAATCGCTGGAGTTGTACCGCTGGACGATCGAGTTCAACTGTCTGCCCGGCGGGCCCTGGGACACGGCGAAGGTCAATGTCGTTCACGAAGACTTCGAGGACGACAACTACGCCATCCCGCTGGCCGCCGCTGGTTCCCTCCCCTGGGTCCGGTCGACCGCGCACGCGCACACGGGCACGTCAGCGCTGAAGTCCGGCGCGATCACGAACAACCAGACCAGCGACGCGGTTCTGTCCCTCCCTGCCGGCGTGACGGAGCTGTCCTTCTGGTACTTCACGAACAGTGAGAACTTCGGGACCGGCTTCACGGGCGACTACCTGACCGTTCTGGCGGATGGTGTGGAGGTCCTCCGGGCGCAGGGCTCCACGCCGTGGACAAAGAAGACGCTGAACGTGACTGGCGTGTCCACGATCGTGTTCCGCTACCGGAAGGACAACTCCGCGGCCAGCGGTGAAGACGCTGTCTGGATTGACAACCTGCGCATGGTCTACGGCACGTACCGCGCGGCCAAGGTGCAGACGGACGGGTCCACGCTGACCGCTCCCGTTAACGCCACTGCCACGTCCCTGACGGTCGCTTCGCCGGCCGCTCCCTGGACGACCAATCCGATTGACCTTCCCATCCCGATCACGGTTGACGGTGAAGTCATGTCGGTGACGGCCATCAACGTGGACACGTCGCCGCAGATCTTCACTGTCACGCGCTCTGTGAACGGTGTCAGTAAGTCGCATCTGGCGGGGGCCTCCGTCACCTTGGCCCGCCCCGCTGTCGCGCCCTTGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
72e5405aec5290c48d65df6fb65195d2909f43dc495260a27aca58649222f147
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3064
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genomic sequence analysis of the temperate bacteriophage phiSASD1 of Streptomyces avermitilis Wang,S., Qiao,X., Liu,X., Zhang,X., Wang,C., Zhao,X., Chen,Z., Wen,Y. and Song,Y. 2010 20447671 GenBank