Protein

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UniProt accession
A0A8S5NDG9 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADYEIVDVTKLQKAEGVKDGDTLLLIRQQGDGTSICMRTDGAQFKGTDAYDVAKANGFSGTREEWTQEVARINEVSAAIDNANDTANHPTKIGSDNYVYEWNKATKAYQKTDILVKGDKGERGATGAQGPQGLQGVKGETGATGATGPQGATGAQGPQGERGEKGKSPIIKNASWWIWDEASGAYKDSGMSVSSQYTLTREAIENVLTGDVSSHTHSAYALMGHTHTQYAAADHTHSNYALTTHKHTEYAAVSHTHDNYALTGHKHTEYVPTTALSDYYTKKEVEDMVGNAGGGVDESWLQQKGYLKKSDMMETVVIKLVSDKGESDSGLIGATVTVRGKGIVYTKETWQGTPIKVEVMCDRDVIIDVSAVKMYAKPKVLKYVPSPLYNREVTFTYKALELGVFVIDINDKLYRTVGDVINKTDIVGALLVTDKVAIVIAAQLFLETKWSNKNGLIDGCTVANDVTTAVQDFAGAANTTAIMKANAGFDTAASICNDYVFRNGKKGHLMSGGEAIEIQKNFDTVQSLLTDIDPNNAPVYNISYWTSTQKGTDAVWGCSLGDDSLIDYYITLPETNTVITSAAFPIYSLYD
Physico‐chemical
properties
protein length:591 AA
molecular weight: 63943,58510 Da
isoelectric point:5,22768
aromaticity:0,08291
hydropathy:-0,36751

Domains

Domains [InterPro]
DC_0329
ATT
5–536
DC_0329
PTHR24637
Unmapped
118–167
PTHR24637
IPR008160
STR
118–167
IPR008160
A0A8S5NDG9
1 591
Architecture
ATT
ATT 5-536 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Myoviridae sp. ct0Tg8
[NCBI] 		2826598 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD92131.1 [NCBI]
Genbank nucleotide accession
BK015128 [NCBI]
CDS location
range 30296 -> 32071
strand +
CDS
ATGGCAGATTATGAAATTGTAGACGTTACGAAGCTTCAGAAGGCTGAGGGCGTAAAAGATGGTGACACGCTGCTGCTGATACGCCAGCAGGGCGACGGCACGAGTATATGTATGCGCACTGACGGCGCACAGTTTAAAGGCACTGACGCCTATGACGTGGCGAAGGCTAACGGCTTCAGCGGCACGCGCGAGGAGTGGACGCAGGAGGTTGCGAGGATTAATGAGGTGTCGGCGGCGATAGACAACGCCAATGACACCGCCAATCATCCGACGAAAATCGGCAGCGACAACTACGTGTACGAGTGGAACAAGGCGACCAAGGCTTACCAGAAAACCGACATCCTCGTTAAGGGCGACAAGGGCGAGAGAGGCGCTACGGGCGCGCAAGGGCCTCAGGGCTTGCAGGGTGTGAAGGGCGAGACTGGCGCTACGGGCGCAACCGGACCGCAGGGTGCTACGGGCGCGCAAGGACCTCAGGGCGAGAGGGGCGAGAAGGGCAAATCGCCGATCATCAAGAATGCGTCGTGGTGGATTTGGGACGAGGCGAGCGGGGCATACAAGGACAGTGGCATGTCGGTGTCGTCGCAGTATACGCTGACCAGGGAAGCCATAGAGAATGTGCTGACGGGTGATGTCAGCTCGCACACGCATAGTGCTTATGCTCTGATGGGGCACACTCACACGCAGTATGCAGCTGCTGACCATACTCACAGCAATTATGCCTTGACAACTCACAAGCATACCGAGTATGCAGCTGTTAGCCACACACACGACAATTATGCGCTTACGGGGCATAAGCATACAGAGTATGTGCCGACAACGGCTCTCAGCGACTACTACACTAAAAAGGAGGTAGAGGATATGGTTGGCAATGCCGGCGGCGGTGTAGACGAGAGCTGGCTGCAGCAGAAGGGGTATCTCAAAAAGAGCGACATGATGGAGACTGTTGTCATTAAGCTTGTGAGTGACAAGGGAGAGTCTGACTCCGGGCTGATTGGCGCGACTGTTACTGTGAGGGGTAAAGGAATTGTATATACCAAAGAGACTTGGCAGGGTACTCCTATAAAGGTTGAGGTGATGTGTGATAGAGATGTGATAATAGATGTTAGTGCTGTAAAGATGTATGCAAAGCCAAAGGTGTTGAAGTATGTGCCTTCACCGCTGTATAACAGAGAGGTGACGTTTACGTATAAGGCTTTGGAGCTGGGTGTGTTTGTCATTGATATAAATGACAAGTTATATAGGACAGTGGGAGATGTTATAAATAAAACTGATATAGTAGGCGCACTGCTCGTTACAGATAAGGTGGCTATTGTAATAGCAGCTCAATTATTCCTTGAAACTAAATGGAGTAATAAAAATGGGCTTATTGATGGATGCACAGTTGCTAATGATGTAACTACAGCTGTTCAGGACTTTGCTGGTGCAGCAAATACAACAGCCATCATGAAGGCAAATGCAGGTTTCGATACTGCTGCAAGTATATGTAATGATTACGTCTTTCGAAATGGGAAAAAAGGCCACCTCATGTCGGGAGGTGAAGCCATAGAAATACAGAAAAACTTCGACACTGTTCAGTCACTATTGACGGATATTGATCCGAATAACGCACCAGTATATAATATATCGTATTGGACTTCTACACAGAAAGGAACTGATGCTGTATGGGGCTGCTCACTGGGTGATGATTCTCTTATTGATTACTATATAACACTGCCAGAAACCAATACAGTAATAACCAGTGCAGCTTTCCCCATCTATTCATTATACGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0f20e12fe4cab539d97e33d275fc640253b144d2db2f1e70f0c869398c0197cc
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6853
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50