Protein

View in Explore
Genbank accession
XGU02688.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MNFVVNHVPDGVPVRVFIDEIGEDNDVTEDFEALKGNATFHIVESAGGGAIKGVMKIFSVILKPLAKLLSPSVKGASSNLVNSQADSPNNSLTDRNNKARPYERSYDICGTVQTIPNNLMSTYKVFNAAGKIVEYGYHDAGRGYLDIHPEGITDGDTRVSDITGTSVAVYAPYTSPNNTSTPQVMVGDPIEQGLYITVESNEVDGVVLKAPNGLGISFSYMSGYPSLSGNIGTIYDPTGGSDFSGLLVPDDTFSLVSAWTNTDVDLSGGGYQVLSVSEGTITFIVPGGLIGRWQEIRPGSFFRGDGEASLQPDNTYEKTLTDWVSINRTEVERIVANIAAANGMYKDNGKSKTLASVTAEIQYQLLDENSVPYGPIYTAQGTVSGRTPDYNGVTIYADLPVVSRVRVRARRVTHLHFNFEGSVVDEITYVNLYGQTRDNTPHYGNRTTVHSMRKQTPRAAEVKQPQLRMIATEMVYKYLGNGVFEDTMTPNTQAVQSLIRLARDPDVGGLNLTVRNMDKLLAVQNEVEAYFGDKQAGEFCYTFDDYKTTMQDIVSTIADAIFCTPYRRGADILLDFERPRMGPEMVFTHRSKAGTSEKWTRTFNDAQVFDSLKFSYIDPKTNVKETITIPETGGLKTETYDSKGIRNYKQAFWAANRRHQKNILKKISVSFTATEEGIFALPNRAVSVVKGSRMATYDGYVTAVNGLTVELSQPVKFTSGDDHSLVLKLRDGGVQSVRVVPGAHDRQVIMTSVPQEAIYTGNSALKTEFSFGNEARHNAQMILVSTVDPGDDRTVKITGFNYDKDFYKFDNVPPFGRAFSNGFDNGFN
Physico‐chemical
properties
protein length:828 AA
molecular weight: 90974,77230 Da
isoelectric point:5,43576
aromaticity:0,09541
hydropathy:-0,33841

Domains

Domains [InterPro]
DC_0118
STR
1–662
DC_0118 DC_0808
NF040662
Unmapped
328–808
NF040662
XGU02688.1
1 828
Architecture
STR
RBD
STR 1-662 | RBD 679-822 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XGU02688.1
1 828
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,9658
Central domain 208 406 200 0,6813
C-terminal 407 828 421 0,1772
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-406
C-terminal
407-828

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SE127_1P
[NCBI] 		3236692 Viruses >
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XGU02688.1 [NCBI]
Genbank nucleotide accession
PP921803 [NCBI]
CDS location
range 1031 -> 3517
strand -
CDS
ATGAACTTCGTCGTGAACCATGTTCCGGACGGGGTGCCGGTGCGTGTTTTCATTGACGAAATCGGAGAAGATAACGACGTAACAGAAGACTTCGAAGCACTGAAAGGAAACGCGACTTTCCACATTGTGGAATCTGCCGGTGGTGGCGCTATTAAAGGCGTCATGAAGATTTTTAGCGTTATCCTTAAACCGCTAGCGAAACTATTATCACCATCCGTGAAAGGGGCGTCATCTAACCTTGTGAACTCGCAGGCGGATTCCCCGAACAACAGTCTCACCGACCGTAACAACAAGGCACGCCCATACGAGCGCAGCTACGACATCTGCGGAACGGTGCAAACTATCCCAAATAACCTTATGTCTACTTATAAGGTGTTTAACGCCGCTGGTAAAATTGTAGAGTACGGCTATCACGACGCCGGGCGTGGATACCTCGACATACACCCGGAAGGTATAACGGATGGGGATACCCGTGTATCGGATATAACAGGTACGTCGGTTGCTGTGTACGCACCATATACATCGCCCAATAACACATCTACACCGCAGGTCATGGTTGGGGACCCCATAGAGCAAGGCCTATACATTACCGTAGAATCTAACGAAGTTGACGGCGTGGTTCTTAAAGCACCGAACGGTCTGGGCATTTCTTTCTCTTACATGTCCGGGTATCCGTCTTTGTCCGGAAACATTGGCACGATATATGACCCAACAGGTGGTTCGGATTTTTCTGGGCTGTTGGTTCCTGACGACACGTTTTCGTTGGTGTCAGCATGGACAAATACGGACGTCGACCTATCCGGCGGCGGGTATCAGGTGTTAAGCGTATCCGAAGGGACCATTACTTTTATCGTGCCTGGCGGCCTTATTGGGCGGTGGCAAGAAATAAGACCCGGTTCATTTTTCCGCGGTGACGGAGAGGCGTCGCTGCAACCGGATAATACATACGAGAAAACATTAACCGATTGGGTGTCTATAAACCGCACCGAGGTTGAGCGCATAGTCGCCAATATCGCTGCTGCCAATGGCATGTATAAAGACAACGGCAAGTCAAAAACACTGGCATCCGTTACCGCTGAGATACAGTACCAGCTACTTGATGAAAATAGCGTTCCTTACGGGCCAATATACACGGCGCAAGGAACCGTGTCCGGGCGAACCCCAGACTACAACGGTGTCACTATTTACGCCGACCTGCCGGTTGTGTCGCGGGTGCGTGTGCGCGCCAGAAGGGTGACACACCTCCACTTTAATTTCGAGGGGTCTGTAGTTGATGAGATAACGTACGTTAACTTGTACGGGCAAACACGCGATAACACTCCGCACTACGGCAACAGAACTACTGTACACTCGATGCGCAAGCAGACACCGCGTGCTGCAGAAGTTAAGCAACCACAGTTGCGCATGATTGCGACCGAAATGGTATACAAATACCTTGGTAATGGCGTTTTTGAGGATACCATGACTCCCAATACCCAGGCCGTGCAATCTCTCATCCGCCTGGCACGTGACCCGGATGTGGGGGGTTTAAACCTGACGGTACGCAACATGGATAAGTTACTTGCCGTGCAGAACGAGGTCGAAGCGTATTTCGGCGACAAACAGGCGGGGGAATTTTGCTACACGTTTGATGACTATAAAACCACTATGCAGGACATAGTTAGTACTATAGCCGACGCTATCTTCTGTACTCCATACAGGCGTGGGGCGGATATCCTTCTCGATTTTGAACGCCCTCGCATGGGCCCCGAGATGGTGTTCACCCACCGAAGTAAGGCCGGTACTTCCGAAAAATGGACCAGAACCTTTAACGATGCTCAGGTGTTCGATAGTCTTAAATTCTCGTACATAGACCCTAAAACAAACGTTAAAGAAACCATAACAATACCTGAAACCGGGGGCCTTAAAACGGAGACTTATGACTCAAAAGGAATCCGCAACTATAAGCAGGCTTTCTGGGCGGCAAACCGTCGCCACCAGAAGAACATTTTAAAGAAAATTTCGGTGTCGTTTACCGCCACTGAAGAGGGTATTTTCGCCCTTCCGAATCGTGCTGTTAGTGTGGTTAAGGGTTCCCGTATGGCTACCTACGACGGCTACGTAACCGCGGTGAACGGCCTCACCGTAGAGCTTTCGCAGCCAGTTAAGTTCACCTCCGGGGATGACCATTCTTTGGTTCTGAAGTTACGCGACGGCGGAGTCCAAAGTGTTCGTGTTGTCCCTGGTGCGCATGACCGACAAGTAATTATGACGTCGGTGCCGCAAGAAGCCATTTACACTGGTAATAGTGCTTTGAAAACTGAATTTTCATTCGGCAACGAAGCAAGGCATAATGCTCAGATGATTCTTGTTTCTACGGTAGACCCTGGCGATGACAGAACAGTCAAAATAACCGGGTTTAACTATGACAAGGATTTCTATAAGTTTGACAACGTGCCTCCTTTCGGTCGTGCGTTCTCTAACGGATTCGATAACGGTTTTAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
40114e4124efe28f715a790d0c949c489d3fd31ff4da32c55c1259236ac422bc
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3149
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Characterization of phages against Salmonella spp. and Campylobacter spp. isolated in the United Kingdom Mutai,I.J., Gurusinghe,A., Wang,B., Clark,M. and Bhandare,S.G. 2021-12-15 — GenBank