Protein

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Genbank accession
AGC35552.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MAGALISTTIPNLINGVSQQPYALRLASQCELQENAHSSVVEGLRKRPGTTHRAKITNAPAGELFTHTINRDRNEQYEVIVGNGALKVYDLKTGVEKTVAFPNGTAYLAAADPRSAFKAVTIADYTFLINRTITVEQDTTLSASRQPEAIVWIKQGAYGTKYSINLNGNTAEVNTPDGSVAAHIAQVQTDAIAANLITAINSQAPGFTVVRSGSSIWIRKNDGNDFTVNVTDSQGDQATKLVKRSVQRFSDLPAKGFDGFSVEIAGDQSSSFDNYYVKYQTSSGFESGVWVESVKGGEAIRLKSSTMAHALVREANGTFTFKQVTWEDRKVGDLDSSPMPSFVGKKMNDIFFHRNRLGFIADENVCFSRASDFFNFFRSSATQVLDTDPIDAAVSHIKVSILQHAIPFNETLLLFSEQTQFQLGAVDLLTPETIAINQTTEFECSLKARPVGSGRNIYFTFNRGEFSGLREYYVDGDTKTNDANDVTSHVPAYVPKDISKMAASSSEDTIAMLSENERNTIYVYKYYWNDQEKLQSAWYKWTFPATDTILSVEFVESNLYLIIRRADGVFIESMSVNPGTKDTGFDFGLHLDRKVTEAGCTVSYNATTNKTTITPPYATEAGLLPASEQYVIVARNGDPTKKPGQVIPYTLSGNSLVVSGQLVNFFIGRNYVMRYRFSTFVIKEEAVGGGQMTVGEGRIQLRKANLTYDLSGYFRVEVTPIRRDTYTYIFSGRVIGSAKNVIGQVAVDRGRFAFPIMSKNDAVTIDIVNDTFLPCAFLSAEWEALYVIRSKRL
Physico‐chemical
properties
protein length:793 AA
molecular weight: 87571,38880 Da
isoelectric point:6,15296
aromaticity:0,10467
hydropathy:-0,22346

Domains

Domains [InterPro]
IPR058003
TTP
4–792
IPR058003
AGC35552.1
1 793
Architecture
TTP
TTP 4-792 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGC35552.1
1 793
Domain Start End Length (AA) Confidence
N-terminal 1 139 139 0,9401
Central domain 140 346 208 0,2862
C-terminal 347 793 446 0,2402
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-139
Central
140-346
C-terminal
347-793

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHEph01
[NCBI] 		1220601 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhizobium etli
[NCBI] 		29449 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGC35552.1 [NCBI]
Genbank nucleotide accession
JX483873 [NCBI]
CDS location
range 27313 -> 29694
strand +
CDS
ATGGCCGGGGCGCTCATCTCAACAACCATCCCGAACCTGATCAACGGCGTCTCTCAGCAGCCCTATGCGCTCCGTCTGGCGAGCCAGTGCGAGCTGCAGGAGAATGCCCATAGCTCGGTCGTCGAGGGGCTCCGCAAGCGCCCTGGCACCACGCACCGGGCCAAGATCACCAACGCCCCCGCAGGTGAGCTGTTCACGCACACCATCAACCGCGACCGCAACGAGCAGTATGAGGTCATCGTCGGTAATGGGGCACTGAAGGTCTATGACCTGAAGACCGGTGTCGAGAAGACCGTGGCGTTCCCGAACGGCACCGCATACCTCGCTGCAGCTGACCCGCGATCTGCCTTCAAGGCAGTGACGATCGCTGACTACACGTTCCTCATCAACCGCACGATAACGGTCGAACAGGACACCACTCTGTCGGCCTCCCGGCAACCTGAGGCCATCGTGTGGATCAAGCAGGGTGCTTACGGCACCAAGTACTCGATCAACCTCAATGGCAACACGGCCGAGGTGAACACGCCTGATGGTTCTGTGGCCGCTCACATCGCCCAGGTCCAGACTGACGCAATCGCAGCAAACCTGATCACCGCCATCAACAGCCAAGCCCCAGGCTTCACGGTCGTTCGCAGCGGCTCCAGCATCTGGATCAGGAAGAACGACGGCAACGATTTCACGGTCAACGTGACGGACAGCCAGGGCGACCAAGCAACGAAGCTTGTAAAGCGTTCCGTCCAGCGCTTCTCCGACCTGCCTGCAAAGGGCTTCGACGGTTTTAGTGTCGAGATCGCAGGCGATCAGTCGTCCTCATTCGACAACTACTATGTGAAGTACCAGACCAGCAGCGGCTTCGAGTCGGGCGTCTGGGTCGAGAGCGTCAAGGGTGGCGAAGCAATCCGCCTCAAGTCCTCGACGATGGCCCATGCGCTGGTCCGCGAGGCCAACGGCACGTTCACCTTCAAGCAGGTGACGTGGGAAGATCGCAAGGTCGGAGATCTCGATAGCAGCCCGATGCCGTCCTTCGTAGGCAAGAAGATGAACGACATCTTCTTCCATCGCAACCGGCTCGGCTTCATCGCGGACGAGAATGTCTGCTTCTCTCGCGCCAGCGACTTCTTCAATTTCTTCCGTTCGTCGGCCACCCAGGTCCTCGATACCGACCCCATCGACGCTGCTGTGTCGCACATCAAGGTCTCCATCCTGCAGCATGCAATCCCGTTCAATGAAACGCTGCTGCTCTTCTCGGAGCAGACGCAGTTCCAGCTCGGGGCTGTCGATCTGCTTACGCCCGAGACCATCGCGATTAACCAGACGACCGAGTTCGAGTGCTCCCTTAAGGCGCGGCCGGTCGGCTCGGGCAGGAACATCTACTTCACCTTCAACCGAGGTGAGTTCTCGGGCCTGCGCGAATATTACGTCGATGGGGACACCAAGACGAATGACGCGAATGACGTGACCTCGCACGTCCCGGCCTATGTGCCGAAGGACATCTCGAAGATGGCTGCCTCGTCTTCCGAGGACACCATCGCCATGCTGTCGGAAAACGAGCGCAACACGATCTACGTCTACAAGTACTACTGGAACGACCAGGAGAAACTCCAGTCGGCGTGGTATAAGTGGACGTTCCCGGCGACCGACACGATCCTCTCTGTCGAGTTCGTCGAGAGCAACCTCTACCTGATCATTCGGCGCGCTGATGGCGTGTTCATCGAGAGCATGTCGGTCAACCCCGGCACCAAGGACACGGGCTTCGACTTCGGCCTTCACCTCGACCGCAAGGTCACTGAGGCAGGCTGCACGGTCAGCTATAACGCGACCACGAACAAGACCACGATCACGCCACCGTATGCCACCGAAGCCGGCCTCCTGCCTGCCAGTGAGCAATACGTTATCGTCGCCCGCAATGGTGACCCCACCAAGAAGCCTGGGCAGGTGATCCCATACACCCTCAGCGGTAACTCGCTGGTGGTCTCGGGGCAGCTCGTCAACTTCTTCATCGGGCGAAACTACGTGATGCGCTACCGCTTCTCGACGTTCGTCATCAAGGAGGAGGCGGTTGGCGGTGGTCAGATGACCGTGGGCGAGGGGCGTATTCAGCTCCGCAAGGCCAACCTGACCTACGACCTCAGCGGCTACTTCCGTGTCGAGGTAACGCCCATACGGCGAGACACCTACACCTACATCTTCTCGGGTCGAGTGATCGGCTCGGCCAAGAATGTGATCGGGCAGGTGGCTGTCGACCGGGGCCGGTTCGCGTTCCCGATCATGTCGAAGAATGACGCGGTCACCATCGACATCGTCAACGATACCTTCCTCCCTTGCGCCTTCTTGAGCGCGGAGTGGGAGGCCCTTTACGTCATTCGTTCAAAGAGGCTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
764776f42f9585d873cf5282cf063dedfb75625990c7a63e8bdf886e85475996
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9325
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Narrow Host-Range Bacteriophages that Infect Rhizobium etli associate with Distinct Genomic Types Santamaria,R.I., Bustos,P., Sepulveda-Robles,O., Lozano,L., Rodriguez,C., Fernandez,J.L., Juarez,S., Kameyama,L., Guarneros,G., Davila,G. and Gonzalez,V. 2013 24185856 GenBank