Protein

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Genbank accession
XOL10480.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNEMFSQGGKGSTGILTNKQAIARHFGVKQSEIVYFSVGVDLGGYKVIYDKETQRAYSLPASIASGTTAISLSAAAVLVHSAGSVDLGALAVSREEYVTLPGSFDSGSMLNVKNELLTYTDGKYRWDGAFPKTVAAGSTPESTGGIDIGAWISVGDAAFRGEANKKFKYSVKLSDYSTLQEAATAAIDGLLIDVDYIFTAGESVDFSGKVLTIECKEKFIGDGMLIWNGLGAGSVIKSPHMHTKTTPYTVYRFDANGNWVTNPAQVLASVQQRLDKGYKPNVNDLDIWDNLPDNVKNQVAGATLRIMNGDNIIVEEPQATFGGYLFTLCNHILVKKPRNFIAWESGITFENHHTTAWGTGNWVTGGEIKYGSGSAVLFIRNDGGDDHDGGVRDLISYRVGESGVKTYQNEIGGRSARNYRLVFDNITTIQCYYDGIDVNADTGSPTERVDDYSLAEYPWFHLPTQHIIRNIITRDCMGIGAWWDGQKNIIDNVVTYEAHKEGVFDRGTNNDITNITVVGANKDLTNLNQITCEGGSRLRGINIHAYTTQGYAIYAPSSEVSNVSCAGSGTKKLLCTYISDIQGGNINVQHSANQMTLAMQPAMGGTTNPSLLMTADCQVATPGGEASIVKLSAIQEGVRVGEFQLNRLGFKHMSIPVASSQLPESALEHNSSIGFFFGSDGALRLLAKKPDGSYVTYSL
Physico‐chemical
properties
protein length:699 AA
molecular weight: 75486,73710 Da
isoelectric point:5,50931
aromaticity:0,09156
hydropathy:-0,19514

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
91–156
IPR040775 IPR015331
XOL10480.1
1 699
Architecture
ATT
STR
ATT 1-160 | STR 161-699
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOL10480.1
1 699
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,9879
Central domain 179 586 409 0,9867
C-terminal 587 699 112 0,9160
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-586
C-terminal
587-699

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage As2
[NCBI] 		3388310 Viruses >
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOL10480.1 [NCBI]
Genbank nucleotide accession
PQ785583.1 [NCBI]
CDS location
range 58390 -> 60489
strand -
CDS
ATGAACGAAATGTTTAGTCAAGGTGGCAAGGGTTCAACTGGAATCCTAACAAATAAACAAGCAATAGCTAGACACTTTGGAGTTAAGCAATCTGAGATTGTTTACTTTTCGGTTGGTGTAGATTTAGGTGGGTATAAGGTTATCTATGACAAGGAAACGCAAAGAGCTTATTCCCTACCTGCTAGTATTGCTTCTGGTACTACTGCCATCAGTCTTAGTGCTGCTGCTGTACTTGTACATTCAGCAGGTTCTGTAGACTTAGGTGCATTAGCTGTATCTAGGGAAGAATATGTAACCTTACCTGGTTCATTTGATTCTGGTTCTATGCTTAATGTTAAAAATGAATTACTTACTTATACAGATGGTAAGTATCGCTGGGATGGAGCATTTCCTAAAACTGTAGCTGCTGGCTCAACTCCTGAATCAACTGGTGGTATTGACATCGGCGCGTGGATTAGTGTTGGTGATGCGGCATTTAGAGGTGAAGCTAACAAAAAATTCAAATATTCAGTAAAGTTATCTGATTATTCTACATTACAGGAAGCAGCGACAGCAGCCATAGATGGATTGCTTATTGATGTTGACTACATTTTTACCGCAGGTGAGAGTGTAGATTTTAGCGGTAAAGTTTTAACCATTGAATGCAAAGAAAAATTCATTGGCGATGGTATGTTAATTTGGAATGGTTTGGGTGCGGGTTCAGTAATTAAGAGCCCACACATGCATACTAAAACTACGCCGTATACTGTTTACCGATTCGATGCAAATGGTAATTGGGTAACAAATCCAGCACAGGTTCTTGCCTCAGTTCAACAGAGGCTTGATAAAGGTTATAAACCTAACGTCAACGATTTAGATATTTGGGATAACCTACCTGATAACGTTAAAAATCAAGTAGCTGGTGCAACTCTTCGCATAATGAATGGTGATAATATTATTGTTGAAGAACCACAAGCTACGTTTGGTGGGTATTTGTTTACATTATGCAATCACATCCTCGTTAAGAAACCACGCAATTTTATTGCATGGGAGTCTGGTATTACATTCGAAAACCACCACACCACAGCGTGGGGTACAGGTAACTGGGTTACCGGTGGTGAAATTAAGTATGGCTCTGGTTCTGCTGTTTTATTTATCAGAAATGATGGTGGTGACGACCATGATGGCGGGGTCAGGGACCTGATATCGTATCGTGTTGGTGAGTCTGGTGTTAAAACATATCAGAATGAAATTGGAGGTCGTTCCGCCAGGAACTACCGTTTAGTGTTTGACAATATAACTACAATCCAGTGTTACTATGATGGTATTGATGTTAATGCTGACACAGGGTCGCCAACTGAACGTGTGGATGACTACTCACTCGCAGAGTATCCATGGTTCCACCTACCTACTCAACATATCATCCGTAATATTATTACTCGTGATTGTATGGGGATTGGTGCTTGGTGGGATGGTCAGAAAAATATTATTGATAATGTTGTTACTTATGAGGCCCATAAGGAAGGCGTCTTCGATAGGGGTACCAACAATGATATTACTAACATTACTGTAGTAGGTGCGAATAAGGATTTAACTAACCTAAATCAGATTACCTGTGAGGGAGGTAGTAGACTTCGTGGTATTAACATCCATGCATATACTACACAAGGTTACGCTATATACGCTCCGTCTTCAGAAGTAAGTAATGTTTCCTGTGCTGGTTCCGGTACTAAGAAATTACTATGTACCTATATAAGCGATATTCAGGGAGGTAATATCAATGTTCAGCATAGTGCCAACCAAATGACACTTGCAATGCAACCTGCTATGGGTGGTACTACAAACCCATCTTTGCTTATGACGGCAGATTGCCAGGTTGCTACACCAGGGGGTGAGGCAAGTATTGTCAAGCTTTCGGCAATTCAGGAGGGTGTACGTGTAGGTGAGTTTCAGCTTAACCGCTTAGGCTTTAAGCATATGAGTATACCTGTTGCGTCTTCACAATTACCAGAAAGTGCTTTAGAACATAACTCATCTATAGGTTTCTTCTTCGGAAGTGATGGGGCATTGAGATTGCTGGCTAAAAAACCAGATGGAAGTTATGTAACATACTCACTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ca176b1a79d5b7393f1de93ccd9bdc19bff50cc23d987bf9a73776c9754e0b40
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7036
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Surface-mediated Bacteriophage Defense Incurs Fitness Tradeoffs for Interbacterial Antagonism Tsai,C.E., Wang,F.Q., Yang,C.W., Yang,L.L., Nguyen,T.V., Chen,Y.C., Chen,P.Y., Hwang,I.S. and Ting,S.Y. — — GenBank