Protein

View in Explore
Genbank accession
WPJ70255.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MNPEDDRPGDFPMSQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQGLTIDAPNSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNGSAALRFRIHRLSKTLDSGSVYSHINGGSGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAVTVLPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:261 AA
molecular weight: 27760,88360 Da
isoelectric point:5,50403
aromaticity:0,06513
hydropathy:-0,04559

Domains

Domains [InterPro]
IPR015331
RBD
1–261
IPR015331
IPR011050
STR
1–261
IPR011050
IPR012332
STR
1–261
IPR012332
WPJ70255.1
1 261
Architecture
STR
STR 1-261
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPJ70255.1
1 261
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0059
Central domain 11 199 190 0,8798
C-terminal 200 261 61 0,9298
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-199
C-terminal
200-261

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage RA114
[NCBI] 		3075143 No lineage information
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPJ70255.1 [NCBI]
Genbank nucleotide accession
OR242315.1 [NCBI]
CDS location
range 19 -> 804
strand +
CDS
ATGAACCCCGAAGATGACCGCCCAGGGGATTTCCCCATGTCTCAGTACCCGGTACATATGCTCCCTTTAAACCATTTGATAGACAATCTATTTGTTAGAGGTTCGCTGGGGGTAGGATTCGGTATGGACGGGCAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCTGGTTCTGGGGCTTATATTCTTGCCCACGAAACAGTATTCACTAATATCGCAATAATCGATACCAATACTAAAAACTTCCCTGCGAACCAGATATATATCTCGGGGGCATGCCGTGTGAACGGTTTACGTTTGGTCGGCATCCGTTCAACTACCGAACAGGGTTTGACGATAGACGCACCTAACTCTACTGTAAGCGGAATAACGGGCTTCGTGGACCCATCAAGGATTAACGTAGCCAATTTGATGGAGGAAGGTCTTGGTAACTCGCGCATAAACAGTTTCAATAATGGTTCCGCGGCGCTTCGGTTTCGCATCCATAGACTTTCAAAGACCCTTGATAGTGGGTCCGTGTACTCCCACATTAACGGTGGGTCGGGTTCTGGTTCAGCATGGACCGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGGTGACCGTCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAGCCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5a60dde693e8dee97fc0a684a6a7d54bbfe43728048c7868480aa53f927f7a67
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5946
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages to control Salmonella in UK pigs Clokie,M., Atterbury,R., Gigante,A., Thanki,A. and Hooton,S. 2021-11-10 — GenBank