Protein

View in Explore
Genbank accession
AXP07711.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSGYTRQSLAEIQDGEDIVAAPLNDEFDALQDAFNSVTGHVHDGTVGNAPKISLTGAVQGILPITNGGTGGSTAATARTNLGLGTAATANTGTSGATLPFLNGTNSWSGVNTFTGVNPIVISSTAPGIVFTDTDTGVTHSISANSSVGSFSINIDTGSAGSAPLFTMQIKGVTKLNISQTEANYTVPINMDATSAGTTRTNLGLAIGTNVQAYDAALQSISGLTTAADRMIYTTGADTYAVTTLTSTARTLLDDTSTTAMRTTLGVYSTAQVDAAIAAVPGAPTGTVIMHAANTAPTGYLECSGAAVSRTTYSDLFAVIGTVFGAGDGSTTFNLPNLRGEFVRGWDNGRGIDTGRVFGSAQAANISSHTHAIDPPSTATTSDTHSHTFSATTSSDSHTHTFSATTSSDGAHTHTIAYQDRGFSGGTINNAESGGATGTFNTGSSGAHTHTVSGTTSSDAHTHTVSGTTATDAHSHTVDIASFTSGAAGSGTDTRPRNIALLYCIKT
Physico‐chemical
properties
protein length:506 AA
molecular weight: 51021,82740 Da
isoelectric point:5,23705
aromaticity:0,05731
hydropathy:-0,09506

Domains

Domains [InterPro]
DC_1205
STR
11–195
DC_1205 IPR037053 SSF88874
DC_1872
RBD
168–394
DC_1872 DC_1872
SSF88874
STR
282–417
SSF88874
IPR011083
ATT
285–342
IPR011083
AXP07711.1
1 506
Architecture
STR
RBD
ATT
STR
STR 11-195 | RBD 196-274 | ATT 275-342 | STR 343-506
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiM6
[NCBI] 		2301527 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti 1021
[NCBI] 		266834 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Rhizobiaceae > Sinorhizobium > Sinorhizobium meliloti

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXP07711.1 [NCBI]
Genbank nucleotide accession
MH700630.1 [NCBI]
CDS location
range 16930 -> 18450
strand +
CDS
ATGTCTGGTTATACTCGACAATCACTAGCTGAAATTCAAGATGGTGAAGACATTGTTGCTGCGCCTTTGAATGATGAATTTGATGCCCTTCAGGATGCATTTAACTCTGTAACTGGTCACGTCCATGATGGTACTGTTGGTAATGCCCCTAAAATCTCCCTTACGGGGGCTGTACAGGGGATTCTACCAATTACTAATGGTGGTACTGGTGGTTCTACTGCTGCCACTGCAAGGACCAACCTTGGCCTTGGAACTGCTGCTACAGCAAACACTGGAACCTCTGGTGCCACTCTTCCATTCTTGAATGGTACAAATAGTTGGAGTGGTGTTAATACTTTTACTGGTGTTAACCCTATTGTAATTTCCTCTACTGCCCCAGGGATTGTATTCACTGATACGGACACTGGTGTAACTCATTCAATTTCTGCTAATAGTAGTGTAGGGTCTTTTAGTATTAACATTGATACAGGTTCAGCTGGATCTGCTCCCCTATTTACTATGCAGATTAAAGGTGTTACAAAACTAAATATTAGTCAAACGGAAGCTAATTATACCGTACCAATCAATATGGATGCAACTAGTGCAGGAACTACAAGAACTAATCTTGGTCTTGCTATTGGTACTAACGTACAGGCATACGATGCTGCTCTTCAGTCTATCTCAGGATTGACTACTGCTGCTGACCGTATGATCTATACCACTGGTGCTGACACCTATGCTGTAACGACTCTTACGAGTACTGCACGAACTCTCTTGGATGATACTTCTACGACTGCCATGAGAACCACTCTTGGTGTCTATAGTACCGCTCAGGTGGATGCTGCTATTGCTGCTGTTCCTGGTGCCCCTACGGGTACTGTTATCATGCACGCAGCTAATACGGCACCTACTGGATATCTTGAATGTTCTGGTGCTGCTGTCTCTCGTACCACTTACTCAGACCTCTTTGCAGTCATTGGAACTGTCTTTGGTGCTGGTGATGGGTCTACTACCTTTAACCTTCCTAACCTTCGTGGTGAGTTTGTTAGAGGTTGGGATAACGGTCGTGGTATTGACACTGGTCGTGTGTTTGGTTCAGCTCAGGCTGCTAATATTTCGAGCCATACCCATGCTATTGATCCTCCGTCAACTGCTACTACGTCTGACACTCATAGTCATACATTCTCTGCAACTACCTCGTCTGATAGTCACACTCATACGTTCTCTGCTACGACTAGTTCCGATGGTGCTCACACTCACACTATTGCATATCAAGACCGTGGTTTCTCTGGCGGTACTATCAACAACGCAGAAAGTGGTGGTGCTACTGGTACGTTCAACACTGGTTCCAGTGGTGCTCATACCCATACCGTCTCTGGTACGACTAGCTCGGATGCACATACGCACACTGTCTCTGGTACAACTGCAACTGATGCTCACAGCCATACGGTAGACATCGCTTCGTTTACCTCTGGTGCTGCTGGTTCGGGTACTGATACTCGTCCGAGAAACATTGCACTCCTGTACTGCATTAAGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
436e2b5d7822172f84b41cc185f6d4cf81aaf46a2b7c31f0c447570fd7a37d1e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7212
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genome of Sinorhizobium phage phiM6, the first terrestrial phage of a marine group Brewer,T.E., Washburn,B.K., Lynn,J.S. and Jones,K.M. 2018-10-04 — GenBank