Protein

View in Explore
Genbank accession
YP_009785948.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
Protein sequence
MAVPDPQLRYATDVFDANGVTTDWQISFTGGYINPSHVYAMSGMVDEATQLLTDRTSHSVEVLSQDNDASTVRVAPAVAAGRKLYIYRSTPVQQMLVDYVNGSILSKANLNLSNDQLLKIIQEMFDSLNIATLSIDQQVGVIVDLNKIITDIYRQVLELLASGGIVSVAPRVWSGAWAGDNADDTDFIISGADVQDAGFYDVYVNGIGMQPDVDYDINVGSDLTQSAIRFTEVPAEGSIWFAVLRGYAKPYSGPPPITQADLRMPVIEAVGPTYYAAEEIEYGLLRCTYGAGCTVTVNAIPAVGTNRMDAGSYFSIQQHAGPVVVVAASGVNIEVPVGCAAKARGLNSVISLTCIDGDTNTWVLSGDLAKEA
Physico‐chemical
properties
protein length:372 AA
molecular weight: 39751,29530 Da
isoelectric point:4,25311
aromaticity:0,08065
hydropathy:0,12097

Domains

Domains [InterPro]
DC_0914
STR
2–372
DC_0914
IPR005604
ATT
17–133
IPR005604
YP_009785948.1
1 372
Architecture
STR
ATT
STR
STR 2-16 | ATT 17-133 | STR 134-372
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009785948.1
1 372
Domain Start End Length (AA) Confidence
N-terminal 1 260 260 0,9979
Central domain 261 361 102 0,0121
C-terminal 362 372 10 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-260
Central
261-361
C-terminal
362-372

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XAJ24
[NCBI] 		1775250 Uroviricota > Caudoviricetes > Autographivirales > Gujervirinae > Pradovirus
Host Xanthomonas arboricola pv. juglandis
[NCBI] 		195709 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas arboricola

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009785948.1 [NCBI]
Genbank nucleotide accession
NC_047762.1 [NCBI]
CDS location
range 35444 -> 36562
strand +
CDS
ATGGCAGTTCCAGATCCGCAGCTGCGCTACGCAACAGACGTGTTTGACGCTAATGGCGTCACCACCGACTGGCAGATCAGCTTTACCGGTGGCTACATTAACCCGTCCCACGTGTACGCAATGAGCGGCATGGTGGACGAGGCAACGCAGCTGCTGACAGACCGGACCTCTCACAGTGTGGAAGTCCTATCGCAAGACAATGATGCGTCTACCGTGCGAGTGGCCCCGGCCGTCGCCGCTGGGCGTAAGCTCTACATCTACCGGAGCACTCCGGTACAGCAGATGCTTGTTGACTACGTTAATGGCAGCATCCTCAGTAAGGCAAACCTCAACCTCAGCAACGACCAGCTCCTGAAGATTATCCAGGAGATGTTCGACTCCCTCAACATCGCAACCCTTAGTATCGACCAGCAGGTTGGTGTCATCGTTGATCTTAACAAGATCATCACCGACATCTACAGGCAGGTTCTGGAATTGCTAGCGAGCGGCGGTATTGTGTCCGTGGCCCCGCGTGTTTGGTCGGGAGCTTGGGCTGGTGATAACGCGGACGACACGGACTTTATCATCTCCGGGGCGGATGTTCAAGATGCGGGTTTCTACGATGTGTACGTGAACGGTATCGGCATGCAGCCGGACGTGGACTACGACATCAACGTAGGGAGCGACCTGACCCAGAGCGCCATTCGTTTCACCGAAGTACCCGCAGAGGGTAGCATCTGGTTTGCTGTTTTGCGTGGATACGCTAAGCCTTACAGCGGCCCGCCACCGATCACTCAAGCCGATCTTCGGATGCCGGTTATCGAGGCTGTGGGTCCAACGTACTACGCAGCTGAGGAGATCGAGTACGGCCTTCTGCGTTGCACGTACGGCGCTGGCTGCACAGTTACGGTCAACGCGATTCCGGCCGTTGGTACGAATCGTATGGACGCCGGTAGCTACTTCAGCATCCAGCAGCACGCTGGTCCAGTTGTCGTAGTTGCGGCGAGCGGTGTCAACATCGAAGTACCAGTTGGCTGCGCTGCTAAGGCACGTGGCCTGAACTCCGTCATCTCTCTCACGTGTATCGACGGCGACACTAACACGTGGGTTCTCTCAGGAGACCTCGCTAAGGAGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
03e2831f8cd25a538a72ed11e49bca52351624771a34bbfac6dd3860f3296d71
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7997
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages of Xanthomonas arboricola pv. juglandis: Characterization of two phages Domotor,D., Frank,T., Rakhely,G., Doffkay,Z., Schneider,G. and Kovacs,T. 2018-01-02 — GenBank