Protein

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Genbank accession
YP_009190257.1 [GenBank]
Protein name
tail needle knob
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,80
Protein sequence
MLIAADSIESLNTKIQEKIADGMYLFGAPTILPSTQFDSDRYFQLMSDTRDTVPGPPGAKGDKGDEGDPSTVPGPPGAKGDTGAAGLSAYQTWLNLGHTGTEQDFLNSIAGTRQKSEAFWTGLSIALTAGTTYNLINILKGTPTTAGQLAPFFRIADNKLWPFNSDTTMTFKLNVTGAFTGASQARSLTINFVGTNGNTLVQNRPENAIDTMSFATFFSVDKNGQMATNGSVIDIIANGGVFTINSVLLVAEQVVKS
Physico‐chemical
properties
protein length:257 AA
molecular weight: 27175,13770 Da
isoelectric point:4,74960
aromaticity:0,08560
hydropathy:-0,12257

Domains

Domains [InterPro]
DC_1780
STR
76–252
DC_1780
IPR038681
STR
96–253
IPR038681
IPR032395
RBD
109–253
IPR032395
YP_009190257.1
1 257
Architecture
STR
STR 76-253 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Edwardsiella phage PEi20
[NCBI] 		1608310 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Kanagawavirus
Host Edwardsiella ictaluri
[NCBI] 		67780 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009190257.1 [NCBI]
Genbank nucleotide accession
NC_028683 [NCBI]
CDS location
range 53793 -> 54566
strand +
CDS
ATGTTAATTGCTGCAGACTCTATAGAAAGCCTGAACACTAAGATTCAAGAGAAGATAGCTGATGGGATGTATTTGTTTGGAGCACCAACTATTCTACCATCTACACAGTTTGATTCTGATAGATATTTTCAGTTGATGTCTGACACAAGGGATACTGTACCAGGTCCGCCAGGTGCTAAAGGGGATAAAGGCGATGAAGGAGACCCATCTACTGTTCCGGGTCCTCCAGGTGCAAAAGGAGATACAGGCGCTGCAGGACTTTCTGCTTATCAAACATGGCTTAATCTCGGGCATACCGGTACTGAACAAGATTTCTTAAATTCCATAGCAGGAACAAGACAGAAATCTGAAGCGTTTTGGACCGGATTGTCTATAGCATTAACTGCAGGAACTACTTACAATCTGATAAACATTTTGAAAGGAACGCCTACTACCGCTGGTCAATTGGCTCCATTCTTTAGAATTGCTGATAATAAATTGTGGCCATTCAACTCTGACACCACAATGACATTTAAGCTTAACGTAACAGGTGCTTTTACTGGAGCGAGTCAAGCCCGTAGTCTGACAATTAACTTTGTTGGGACTAACGGCAACACTTTAGTTCAAAACCGTCCTGAAAATGCTATAGACACTATGTCATTTGCCACATTCTTTAGTGTAGACAAGAATGGACAAATGGCAACTAATGGTTCTGTTATCGATATAATCGCCAATGGAGGTGTGTTCACCATTAACAGTGTTCTTTTAGTAGCAGAACAAGTAGTGAAGTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
67b7ac943d3d0dea50c6ee16bfafcdba77085872153c7ea96127b16da89afd34
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7494
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Edwardsiella bacteriophages, PEi20 and PEi26 Yasuike,M., Nishiki,I., Iwasaki,Y., Nakamura,Y., Fujiwara,A., Hassan,E.S., Mahmoud,M.M., Kawato,Y., Nagai,S., Kobayashi,T., Ototake,M. and Nakai,T. 2013-02-28 — GenBank