Protein

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Genbank accession
AFK87700.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,57
Protein sequence
MAREDLLARLLIQLTEKEGPPPEDDNSLIQKMIAPNDSAQLSDNGVNLSLLNPATFVWGGAIFNAASFARNSNAYLSNGILVTANTPRYETGQFGQAIMIEEGTTNLVTNGSFENGISGCGSYASGTSPTISQDTIGFIGAHSLKIVSNNTTAISTWLPAVSITAGTTYTFTCYTQETGISGKSVYLQLSWRDSNNNTITYTNGNTVQAQSTWHRLSVTGAAPTNSVKVYPYIYIIGTINVGDIQWIDAAQVEAKPYATSYTDSTRVAEVLKIPNPIDITKPWTIEHRFIAKQPSSIAGASNWLGLSWFDTLPSTAVWVNNGLLEAAWNNTQLCNPNISFNAGDIIYYAWRYDGTNMVFSVGKNGASLVTTSIAVPTLTTQPSYIYIGSDLNGNQQSDVLHDDFRVSNKYRTDAEIAQAYASGQPLPVDSSTTCKLNFDSNLNNIAYLASNWNWGQGQWK
Physico‐chemical
properties
protein length:460 AA
molecular weight: 49941,88280 Da
isoelectric point:4,82150
aromaticity:0,10217
hydropathy:-0,20261

Domains

Domains [InterPro]
DC_1862
STR
40–452
DC_1862
G3DSA:2.60.120.260
STR
101–253
G3DSA:2.60.120.260 IPR013320
G3DSA:2.60.120.200
STR
281–444
G3DSA:2.60.120.200
AFK87700.1
1 460
Architecture
STR
STR 40-452 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFK87700.1
1 460
Domain Start End Length (AA) Confidence
N-terminal 1 263 263 0,1852
Central domain 264 449 187 0,5247
C-terminal 450 460 10 0,8523
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-263
Central
264-449
C-terminal
450-460

Taxonomy

  Name Taxonomy ID Lineage
Phage Thermoanaerobacterium phage THSA-485A
[NCBI] 		1126885 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Thermoanaerobacterium saccharolyticum JW/SL-YS485
[NCBI] 		1094508 Bacteria > Firmicutes > Clostridia > Thermoanaerobacterales > Thermoanaerobacterales Family III. Incertae Sedis > Thermoanaerobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFK87700.1 [NCBI]
Genbank nucleotide accession
CP003186 [NCBI]
CDS location
range 10175 -> 11557
strand -
CDS
ATGGCAAGAGAAGATTTATTGGCGAGATTGTTAATACAATTGACTGAAAAAGAAGGACCGCCTCCAGAAGATGACAACAGCTTAATACAGAAAATGATAGCACCTAACGATAGTGCACAGTTAAGCGACAATGGTGTAAATTTAAGCTTGTTGAATCCTGCTACTTTTGTGTGGGGTGGCGCAATATTCAATGCAGCGTCTTTTGCAAGAAACTCTAACGCTTACCTTTCAAATGGGATATTAGTTACAGCGAATACGCCACGTTATGAGACTGGACAATTTGGACAGGCGATAATGATAGAGGAAGGAACAACAAATTTAGTTACAAACGGTAGCTTTGAAAATGGTATAAGCGGATGTGGCTCTTATGCATCTGGTACTTCTCCAACTATTTCGCAAGATACTATTGGTTTTATAGGTGCACATTCTTTAAAGATAGTATCGAATAATACTACTGCAATAAGCACTTGGTTACCTGCTGTAAGTATAACAGCAGGAACTACTTATACTTTTACGTGTTATACGCAAGAAACAGGTATTTCAGGGAAAAGTGTGTACTTGCAATTGTCGTGGCGTGACAGTAATAACAATACTATAACATATACTAACGGAAATACAGTTCAAGCACAAAGCACTTGGCATAGATTGAGTGTAACAGGTGCTGCACCAACTAATTCAGTAAAAGTATATCCATATATTTACATTATTGGTACTATAAATGTAGGAGATATACAATGGATAGATGCAGCTCAAGTTGAAGCCAAACCCTACGCTACTTCCTATACAGACAGTACACGTGTAGCGGAAGTGCTTAAAATTCCTAATCCTATTGATATTACAAAACCCTGGACGATAGAGCATAGATTTATAGCAAAACAACCGTCAAGCATAGCAGGTGCTTCAAATTGGTTAGGATTAAGTTGGTTTGATACGTTACCTTCTACTGCTGTATGGGTAAATAATGGTTTATTGGAAGCAGCATGGAATAATACTCAATTATGCAATCCGAATATATCTTTTAATGCAGGCGATATAATCTATTATGCGTGGCGATACGACGGAACAAACATGGTATTTTCTGTAGGTAAAAATGGTGCTTCTTTGGTTACCACTTCTATAGCAGTTCCTACTTTAACCACACAACCAAGTTACATTTATATAGGTTCTGACTTAAATGGTAATCAGCAATCTGATGTTTTACATGATGATTTTAGAGTATCTAATAAGTATAGAACAGATGCAGAAATAGCACAGGCGTATGCAAGCGGACAACCGTTGCCTGTAGACAGCAGTACAACGTGTAAACTTAATTTTGATAGTAATTTGAATAACATAGCATATTTAGCTTCTAATTGGAACTGGGGGCAGGGACAATGGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
39f9700cd17b69ec80c868d5cad718778fe79d105ea705d4bbfd1d56208c868f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8011
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Thermoanaerobacterium saccharolyticum JW/SL-YS485 Brown,S.D., Land,M.L. and Herring,C.D. 2015-06-26 — GenBank