Protein

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Genbank accession
WZK93682.1 [GenBank]
Protein name
DUF2479 domain-containing protein
RBP type
TSP
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVRKNKNVEFNINSKSSDYGSIDSNFYTGDNGSATISIRIKYGKDYLNLTKTGMKPKLNLYHSNGSVWLDEDLFIPIPEVGLIQYDISSNVIRNDGTVSAKLFLENGRKSIHVANFSFVIKDSGIEGIEEKDITVELVRSTLVEIMKENSLGILDDEYKESLFEDIKEYLLSNDSFRGQDGVNGLQGPQGPQGDKGVKGDKGDKGDQGLQGEQGMRGPQGLTGSKGDTGSQGPQGPKGDQGLQGDKGDALKYADLSQTEKEDLKSNITDQAVTDFVLEDGMITRNKISDEYLNNGLLPNGTDTYLVKKVGNYMGNPDGGYLNLPADFNPKKSFLFEVKTISSVWYMQILTDFSEPMNSWKRTIRINNDSVKNPWYRNYNLEGAKLNTQSLADAYNFREILPTNTDIDTIYKAGIYTCIGTNQYNNIPEELNGRSFILKTYSGRSDGAFNTQEITPMDDNSITFKRYRMYKTDKSEWAKYKAVTNTNNNNNSTLPLEGKKIVMFGDSITENGTYPEQFAELSKAQVIKAGFGGCRMAQHQQAGTGLLYDKQCMYRLVDCIKNNDFTDLVQATEDMVRANGDDNRPQAFRLRDTDWNTVDYITIFFGTNDYGGDIPIGNDDDTDGTTFKGAVNKVIKTLGESVPHIKIMFITPFYRSRFISGDNNDGDNFANAAGAKLNDYVVAIEELAEKNHIPVLNMMKESGINKYNSETYLSDGLHPNAFGYTYLAEQFSKKLPYKL
Physico‐chemical
properties
protein length:738 AA
molecular weight: 82387,86980 Da
isoelectric point:5,01299
aromaticity:0,09892
hydropathy:-0,63930

Domains

Domains [InterPro]
DC_0885
STR
1–315
DC_0885 cd19958 SSF52266
IPR018913
ATT
4–129
IPR018913 IPR050149 IPR036514
G3DSA:2.60.40.3350
ATT
6–125
G3DSA:2.60.40.3350 IPR008160 IPR013830
G3DSA:1.20.5.320
STR
220–276
G3DSA:1.20.5.320
WZK93682.1
1 738
Architecture
ATT
STR
STR
STR
ATT 1-129 | STR 130-315 | STR 400-467 | STR 494-737 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WZK93682.1
1 738
Domain Start End Length (AA) Confidence
N-terminal 1 493 493 0,9876
Central domain 494 703 211 0,7403
C-terminal 704 738 34 0,6393
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-493
Central
494-703
C-terminal
704-738

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage SpP
[NCBI] 		3138563 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus saprophyticus
[NCBI] 		29385 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WZK93682.1 [NCBI]
Genbank nucleotide accession
PP468606 [NCBI]
CDS location
range 2122 -> 4338
strand +
CDS
GTGGTAAGAAAAAATAAAAATGTAGAGTTTAATATTAACTCAAAAAGCTCAGATTACGGAAGTATAGACAGTAATTTTTATACTGGTGATAATGGTAGCGCAACTATCAGTATTAGAATTAAATATGGTAAAGACTATCTGAATTTAACTAAAACAGGTATGAAACCTAAATTAAATTTATATCATAGCAATGGATCGGTTTGGCTAGATGAAGATTTGTTTATTCCAATTCCTGAGGTTGGTTTAATTCAATATGATATATCCTCTAATGTAATTAGAAATGATGGGACAGTTTCGGCGAAGTTGTTTCTTGAAAATGGAAGAAAGTCAATTCATGTTGCAAATTTTTCATTTGTAATAAAAGACAGTGGAATAGAAGGAATAGAAGAAAAAGATATTACTGTAGAGCTAGTAAGAAGCACTTTAGTAGAAATTATGAAAGAAAACTCTTTAGGAATATTAGATGATGAATATAAAGAAAGTTTATTTGAAGATATCAAAGAATATTTATTATCTAACGATTCTTTTAGAGGTCAAGATGGCGTAAATGGTTTACAAGGACCTCAAGGGCCACAAGGTGATAAAGGTGTTAAAGGTGACAAAGGTGACAAGGGTGACCAAGGTTTACAAGGCGAACAAGGTATGCGTGGTCCACAAGGTTTAACAGGATCTAAGGGCGATACAGGATCACAAGGACCACAAGGACCAAAAGGAGATCAAGGTTTACAGGGTGATAAAGGAGATGCTTTAAAATACGCCGACTTATCACAAACAGAAAAAGAAGATTTGAAAAGTAATATTACTGATCAAGCTGTAACAGATTTTGTGTTGGAAGACGGAATGATAACAAGGAATAAAATATCAGATGAATATTTAAATAACGGTTTATTACCTAATGGTACAGACACGTACTTGGTTAAAAAAGTTGGTAATTATATGGGTAATCCTGATGGTGGGTATTTAAATTTACCTGCTGATTTTAACCCTAAAAAATCATTTTTATTTGAAGTTAAAACAATATCTAGTGTTTGGTATATGCAAATACTTACCGATTTTTCTGAACCAATGAATAGTTGGAAAAGAACTATTCGTATTAATAACGACTCTGTAAAGAACCCATGGTACAGAAATTATAATTTAGAGGGTGCTAAGTTAAATACTCAAAGTTTAGCAGATGCATATAATTTCAGAGAAATACTCCCAACTAATACTGACATAGATACTATATATAAAGCTGGTATATACACTTGTATTGGTACAAATCAATACAACAATATTCCGGAAGAATTAAATGGTAGATCATTTATTTTAAAAACATATTCTGGTCGTTCTGATGGGGCGTTTAACACTCAAGAAATAACTCCGATGGATGATAATAGTATCACTTTCAAGAGATACAGAATGTATAAAACTGATAAATCAGAATGGGCTAAGTATAAAGCTGTTACTAATACTAATAACAATAATAATTCAACATTGCCTTTAGAAGGGAAGAAAATTGTTATGTTTGGAGATAGTATTACTGAAAATGGAACATATCCTGAACAGTTCGCAGAATTAAGTAAAGCCCAAGTAATAAAAGCTGGTTTTGGTGGTTGTCGTATGGCACAGCATCAGCAAGCGGGTACTGGTTTGTTGTATGATAAACAGTGTATGTATAGATTAGTAGACTGTATTAAAAATAACGACTTTACAGATTTAGTACAAGCAACAGAGGATATGGTTAGAGCAAATGGTGATGATAATAGACCACAAGCTTTTAGACTAAGAGACACTGATTGGAACACTGTGGACTATATTACTATTTTCTTTGGAACTAATGATTATGGTGGTGACATACCTATAGGTAATGATGATGATACTGATGGTACTACTTTTAAAGGAGCTGTCAATAAAGTTATTAAAACATTAGGTGAAAGTGTACCTCATATAAAAATAATGTTTATTACACCATTTTATAGAAGTAGATTTATTAGTGGCGATAATAATGATGGCGATAATTTTGCAAATGCAGCAGGTGCTAAATTGAATGATTATGTTGTAGCTATCGAAGAATTAGCAGAAAAAAATCATATTCCAGTATTAAATATGATGAAAGAATCTGGAATTAATAAATATAATTCAGAAACTTATTTATCAGATGGGTTACACCCTAATGCTTTTGGGTACACATATTTAGCTGAACAATTTTCTAAGAAATTACCATATAAACTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a8c11353a99186e25845486638229ba971a4890d51d71ce7ac0b010a2a9b409d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7783
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50