Protein

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Genbank accession
YP_006972.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MFYSLMRESKIVIEYDGRGYHFDALSNYDASTSFQEFKTLRRTIHNRTNYADSIINAQDPSSISLAINFSTTLIESNFFDWMGFTREGNSLFLPRNTPNIEPIMFNMYIINHNNSCIYFENCYVSTVDFSLDKSIPILNVGIESGKFSEVSTFRDGYTITQGEVLPYSAPAVYTNSSPLPALISASMSFQQQCSWREDRNIFDINKIYTNKRAYVNEMNASATLAFYYVKRLVGDKFLNLDPETRTPLIIKNKYVSITFPLARISKRLNFSDLYQVEYDVIPTADSDPVEINFFGERK
Physico‐chemical
properties
protein length:298 AA
molecular weight: 34336,31880 Da
isoelectric point:5,35352
aromaticity:0,14094
hydropathy:-0,26812

Domains

Domains [InterPro]
IPR056389
ATT
1–297
IPR056389
YP_006972.1
1 298
Architecture
ATT
ATT 1-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006972.1
1 298
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,9344
Central domain 11 209 200 0,0272
C-terminal 210 298 88 0,2355
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-298

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage T5
[NCBI] 		2695836 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus T5
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006972.1 [NCBI]
Genbank nucleotide accession
NC_005859 [NCBI]
CDS location
range 97458 -> 98354
strand -
CDS
ATGTTTTATTCTCTCATGCGAGAGTCTAAAATAGTTATTGAGTATGACGGTAGAGGGTATCATTTCGATGCCCTCTCTAACTATGACGCTAGTACGTCTTTTCAAGAGTTTAAAACTCTTAGACGTACTATTCATAATCGTACAAACTATGCAGACTCTATTATTAATGCTCAAGATCCTTCATCTATTTCATTGGCAATAAATTTCAGTACTACGCTTATTGAATCTAACTTCTTTGATTGGATGGGATTCACGCGTGAGGGAAATTCTTTATTTTTGCCAAGAAATACTCCCAATATTGAACCTATTATGTTCAATATGTATATTATTAATCATAATAATAGCTGTATTTATTTCGAAAACTGTTATGTATCAACAGTTGATTTTTCTCTAGATAAGAGTATACCGATCCTAAATGTTGGTATTGAGTCTGGAAAATTCTCTGAAGTATCTACTTTCCGAGATGGATATACAATTACACAGGGTGAAGTTCTTCCATATAGCGCTCCTGCTGTGTACACTAATAGCTCTCCGTTGCCAGCGCTAATTTCAGCATCTATGTCTTTCCAGCAACAATGTTCTTGGAGAGAAGATAGAAATATATTTGATATAAATAAAATTTATACTAATAAACGAGCTTATGTCAATGAGATGAATGCTTCCGCAACGCTAGCTTTCTATTATGTTAAGAGATTGGTAGGAGATAAGTTCTTGAATCTAGATCCTGAAACAAGAACTCCACTAATTATTAAAAATAAATATGTTTCTATAACATTCCCTTTAGCACGTATTTCAAAACGCCTAAACTTCTCAGATTTGTATCAGGTAGAGTATGACGTAATCCCTACTGCTGATTCAGACCCTGTAGAAATAAACTTCTTTGGAGAAAGAAAATAA

Genome Context

Genome Context

Tertiary structure

1 / 6
PDB ID
Source
Method
Resolution
Oligomeric State

Literature

Title Authors Date PMID Source
Structure of two promoters and a terminator of transcription from the region of bacteriophage T5 early genes D10-D15 Kaliman,A.V., Krutilina,A.I. and Kryukov,V.M. 1987 — GenBank
The nucleotide sequence of bacteriophage T5 RNAI Kryukov,V.M., Shlyapnikov,M.G., Kazantsev,S.I., Kaliman,A.V., Ksenzenko,V.N. and Bayev,A.A. 1982 — GenBank
Bacteriophage T5 complete genome Ksenzenko,V.N., Kaliman,A.V., Krutilina,A.I. and Shlyapnikov,M.G. 1982-05 — GenBank