Protein

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Genbank accession
AXQ70216.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVAGGASIDYATNTVTGQTQKTLPAILRDLGFEPTSFDFTTGGTLTAADRNKVVFDSVSSTWYSWAGALPKVIPAGTNPLLDTNWRPKTDPDLRADLASTTINKGASLIGTTSGDTVQTEIDKIKLKFNSFSSLRSSEGSLIGDYALLTGWHASYQGYGAGVFKCVDKTGLTDDGGTIAVGSTYAWKRITGPGDATEFGVVPNAGSTFDNKDYILAAAATGALLLPAGDIYTTFFTLTDTYLVRGNFTNIREIEAPGVTDFIVHCSRNGTWEGRIDGLVWEDVSIFPIDTHRGFHTYFTTLGNMRSVRVKGGIGSWIEGASDWSFFQCEFVESKGEQNILITPKVDPQGTIGGGLVFNKCFIARSAKDGASITQMPSVWFRDSVIYHNADTGLRFNTDRTTYPGPEFTVNKVTGCDIDDNYYAGVQITGGRYVDFSNNWVSSGRQNSGPGLSIDNSIGINIESNSVYLCGQNGITVKDSSFGSVSNNNSNDNKNTGIRIINCNRLSVCGNTACGATPLGAFPTAQEEGIRIEGDRISSYGNICTGNSINNYSNVATNKQDGLNITT
Physico‐chemical
properties
protein length:599 AA
molecular weight: 63969,21700 Da
isoelectric point:5,04562
aromaticity:0,09516
hydropathy:-0,22437

Domains

Domains [InterPro]
DC_1596
STR
1–296
DC_1596 IPR011050
G3DSA:2.10.10.80
ATT
66–133
G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
77–112
IPR040775 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
444–582
IPR039448
DC_2234
RBD
446–599
DC_2234
AXQ70216.1
1 599
Architecture
STR
ATT
STR
STR 1-65 | ATT 66-133 | STR 134-599
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXQ70216.1
1 599
Domain Start End Length (AA) Confidence
N-terminal 1 241 241 0,9938
Central domain 242 588 348 0,9951
C-terminal 589 599 10 0,2581
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-241
Central
242-588
C-terminal
589-599

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella virus VSiP
[NCBI] 		2301721 Uroviricota > Caudoviricetes > Sarkviridae > Cornellvirus > Cornellvirus VSiP
Host Salmonella enterica subsp. enterica serovar Infantis
[NCBI] 		595 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXQ70216.1 [NCBI]
Genbank nucleotide accession
MH424444.1 [NCBI]
CDS location
range 21940 -> 23739
strand +
CDS
ATGTCAAGCGGATGCGGTGATGTTTTAAGTCTGGCGGATTTACAGACCGCCAAGAAGCACCAGATTTTTGAGGCCGAAGTTATCACAGGAAAATCAGGTGGTGTAGCTGGGGGCGCGAGTATTGATTACGCGACAAACACTGTTACGGGACAAACCCAAAAGACATTGCCGGCTATACTGCGCGATTTGGGTTTTGAACCAACATCTTTTGACTTTACCACTGGGGGGACATTAACAGCAGCCGACCGTAACAAAGTGGTGTTTGACTCTGTAAGTTCGACCTGGTATTCGTGGGCTGGTGCGCTGCCGAAGGTTATCCCGGCTGGAACAAATCCGCTGCTTGATACTAACTGGAGACCCAAAACAGACCCAGATTTGAGGGCAGACCTGGCGAGCACCACAATTAACAAAGGCGCATCTTTAATTGGTACTACATCCGGCGATACAGTACAAACAGAAATTGATAAAATTAAATTGAAATTTAATTCATTTTCAAGCTTAAGAAGCTCGGAAGGTTCTCTTATCGGCGACTACGCGCTACTTACCGGATGGCACGCTTCCTATCAGGGGTATGGCGCCGGCGTATTTAAATGTGTAGATAAAACAGGGTTAACTGACGATGGGGGTACTATTGCAGTAGGCTCTACGTATGCGTGGAAACGTATAACGGGCCCTGGTGATGCTACCGAATTTGGTGTTGTACCTAATGCCGGAAGTACATTCGATAATAAGGATTATATTCTAGCTGCGGCAGCTACAGGGGCACTTCTTCTCCCTGCAGGCGATATTTACACAACATTCTTCACCCTTACTGATACCTACCTTGTAAGAGGTAATTTTACCAATATTCGCGAAATTGAAGCCCCTGGGGTTACAGACTTTATCGTCCATTGCTCCAGAAACGGGACATGGGAAGGTAGGATTGATGGACTTGTATGGGAGGATGTTTCGATATTTCCTATCGATACGCATCGTGGCTTCCATACATATTTTACCACACTCGGCAATATGCGCAGTGTTAGAGTTAAAGGCGGTATTGGCTCATGGATTGAGGGAGCTTCTGATTGGTCATTTTTTCAATGCGAATTTGTTGAGTCAAAGGGTGAACAAAACATTTTAATAACACCTAAAGTAGACCCGCAGGGGACTATTGGTGGCGGTCTGGTGTTTAACAAATGCTTTATCGCGAGAAGCGCCAAGGACGGGGCCAGTATAACCCAAATGCCATCTGTTTGGTTCAGGGACTCTGTTATTTATCATAACGCAGACACAGGACTTCGATTCAACACAGACCGTACAACATACCCAGGGCCTGAATTTACTGTTAACAAGGTTACTGGTTGTGACATAGATGATAATTACTATGCGGGGGTACAGATAACTGGTGGTCGTTATGTTGATTTCTCAAACAACTGGGTGAGTTCTGGTCGTCAAAATTCAGGCCCTGGATTAAGTATCGATAACAGTATAGGCATCAATATTGAAAGTAACAGCGTTTACCTTTGCGGCCAAAACGGAATAACTGTAAAAGATAGCAGCTTCGGAAGTGTTAGCAACAATAACTCTAATGACAATAAAAATACTGGAATACGCATTATTAACTGCAATAGGCTTTCTGTGTGCGGTAATACGGCATGCGGTGCAACCCCACTGGGGGCCTTCCCTACAGCGCAGGAAGAGGGTATCCGTATTGAAGGGGATAGAATTTCTTCTTACGGCAATATCTGCACCGGCAATTCAATTAACAACTACTCCAATGTAGCGACAAACAAGCAGGACGGGTTGAATATCACCACTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7eb7c16969e97a28ca253c84bd46a499f7fc44920709f06a4850d5be0487cc3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8722
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Salmonella Infantis bacteriophage VSiP Volozhantsev,N., Denisenko,E., Verevkin,V., Myakinina,V., Kislichkina,A. and Krasilnikova,V. 2017-09-14 — GenBank