Protein

View in Explore

Genbank accession

XYH46043.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence GenBank

Probability 1,00

Evidence RBPdetect

Probability 0,83

Evidence RBPdetect2

Probability 0,95

Protein sequence

MADQKKAGMISGMSPLAVLTGDELMEVSSLQQDGTWKTFSIIVNKIRTNAGLSAYEVAVVNGFQGTQEEWLASLEGKDAYEVAVEQGYAGTKAEWLESLVGASAYQDAVAQGYDGTLSEWLNTLKGQSAYQIAVTNGFVGTEAQWLESLKGQSAYQLAKVLDPTVGTEAEWLATLVGKSAYQVAVDAGFNGTEAAWLKSLEGKSAFQIYQSIPGNENKTEAEFIASLKGADGEEGPEGKSAFQVWQALPGNADKTEDDYFAFLKADLTREKLQELLDLGRYVTKDAFTVEGDDSGVIANAGFFNFLFLFDKRIGNEDNSSPAKVPQRSVEMGRMEAEGYSYWKNDSAPTNDPAGKLPAVPNSEVRLYDDGRFEIGSLTDFISFGDGSKVTVTNDEGSTVYDLAEATQGHDGKSAYEIAVENGFVGTEAQWLVSLKGEPGTDGTNGTNGTNGTDGESAYAIWENQPGNAGKTEDEFLLSLKGADGKSAYDIAVEEGFVGDEAAWLASLKGSNGQSAFQLWQAVPGNEDKTESEFLASLVGADGKSAYQVWLALPGNAGKTEADFIASLKGTQGAAGLSAYQIWLNAGNTGTEAQFLASLKGAAGTNGTNGTNGKDGAAINVVATITQAEFDQIVADGDALIGDAYFVDEFMYVYNGTDWVKSPSLKGPTGSGLNYLGVWPDAQQLPTGPTYNAGDTYMWRSNMWTLMLQPTRAWVATGVPGPQGKSAFQVWQELPGNAGKTEAEFIAALKGEQGIEGPDGPEGESAFQVWQAIPGNEGKTQAQFFEALTGAPGESAYDIWLEQPGNEGKTEAEFLASLKGADGTNGTNGIDGENAVAFTIEGQLADVSELPRPGNATKAYYVGQNLYVWIDSKDDYENLGSLNGASAYQIWLSQPGNSGTEEDFLNSLKGKSAYALAVEEGFVGSETAWLASLKGTDGTNGTNGTDGTDGRNLQVNGQQANEAAIKALPSPADQDAWVAEDTGNLWIYNGTEWIDAGPFRGAAGENGKSAYELWEEQAGNAGKSEAEFLASLKGADGTNGTNGTDGVDGQSTYELWLEQPGNAGKSEAEFLESIKGAAGKDGTNGTNGTNGRNVVIKGSVDDEAALGTIVNPQQQDAYTTRDLGILFMYIGTTWTNLGQFRGDQGIQGEQGVAGQGLIIVAEVELLTDRPSPATLEPGQAVFVLEDHRLYQVNDANVYGPGILIQGPQGEEGPEGKQGATGTSISIMGSYANAADLIAAHPTGNPGEGYLVGNDLYLYGVNPTGGATEWFNAGQVRGPQGEQGVPGPRGLRGLIGETGQRGSLWLVLPPGVDTPTADYGRPGDWAVNSQFDSFYRDEATGWGLIGRLVAGDVNSPLPGLGKVVREGNQWVALPIDEVPSPTVDAQYVRKGVTGGKTEWALLSIPSSGIPDVPASTTIPQGRTSAGWTAVMAAPTGQTAGRRYELLNGAWTQSAVQAAAPSTVDTALCYSVTSAGVGSWVGVTFDRYSLKQDTAARQGAFTPDFAVQQTFRINGGTGSTATAVTLPAGATARTMLAVFVVEGNTNKLSFVAGTGTPTLGYNNGVAAADIEYGATQTVITAFWNGFGTWIISKGPSF

Physico‐chemical properties

protein length:	1594 AA
molecular weight:	167575,91970 Da
isoelectric point:	4,28074
aromaticity:	0,09410
hydropathy:	-0,32980

Domains

Domains [InterPro]

DC_1725
STR
19–78

DC_1725 DC_1725 DC_1725 IPR050149

DC_1967
ATT
74–102

DC_1967 DC_1725 DC_1967 DC_1591 DC_1725 DC_1725 DC_1967 DC_1473 DC_1065 DC_1065

DC_2121
ATT
440–484

DC_2121 DC_2121 DC_1725 DC_1065

XYH46043.1

1 1594

Architecture

STR

ATT

STR

ATT

STR

ATT

STR

ATT

STR

STR 19-73 | ATT 74-102 | STR 103-152 | STR 176-199 | ATT 200-292 | STR 313-439 | ATT 440-484 | STR 485-512 | STR 538-567 | ATT 568-777 | STR 788-1553 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1725	STR	DC_1725	19	78	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1967	ATT	DC_1967	74	102	Novel HMM	DC_1967	N-terminal	Low	Positional only	47 proteins / 47 hits
DC_1725	STR	DC_1725	100	127	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1725	STR	DC_1725	125	152	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1725	STR	DC_1725	176	203	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1967	ATT	DC_1967	200	292	Novel HMM	DC_1967	N-terminal	Low	Positional only	47 proteins / 47 hits
IPR050149	Unmapped	-	228	1388	InterPro	Collagen superfamily	-	-	-	-
DC_1591	STR	DC_1591	313	452	Novel HMM	DC_1591	Central	Low	Positional only	28 proteins / 28 hits
DC_2121	ATT	DC_2121	440	484	Novel HMM	DC_2121	N-terminal	Low	Positional only	48 proteins / 48 hits
DC_1725	STR	DC_1725	480	512	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1725	STR	DC_1725	538	575	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_2121	ATT	DC_2121	568	662	Novel HMM	DC_2121	N-terminal	Low	Positional only	48 proteins / 48 hits
DC_1967	ATT	DC_1967	645	777	Novel HMM	DC_1967	N-terminal	Low	Positional only	47 proteins / 47 hits
DC_1473	STR	DC_1473	788	881	Novel HMM	DC_1473	Central	Low	Positional only	59 proteins / 59 hits
DC_1725	STR	DC_1725	870	910	Novel HMM	DC_1725	Central	Low	Positional only	85 proteins / 85 hits
DC_1065	STR	DC_1065	901	1086	Novel HMM	DC_1065	Central	Low	Positional only	109 proteins / 109 hits
DC_1065	STR	DC_1065	1061	1221	Novel HMM	DC_1065	Central	Low	Positional only	109 proteins / 109 hits
DC_1065	STR	DC_1065	1203	1553	Novel HMM	DC_1065	Central	Low	Positional only	109 proteins / 109 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pseudomonas phage Viktualia [NCBI]	3395522	Viruses >
Host	Pseudomonas syringae [NCBI]	317	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Genbank protein accession

XYH46043.1 [NCBI]

Genbank nucleotide accession

PV037725.1 [NCBI]

CDS location

range 257230 -> 262014
strand +

CDS

ATGGCTGATCAAAAGAAAGCTGGTATGATTTCTGGTATGTCTCCGTTAGCGGTGCTTACTGGCGACGAGCTGATGGAGGTATCTTCGCTTCAACAGGATGGTACCTGGAAAACGTTTTCTATCATCGTTAATAAGATCCGCACGAATGCTGGCCTGTCTGCGTACGAAGTTGCTGTTGTAAATGGCTTCCAAGGTACTCAGGAAGAGTGGCTTGCATCGTTGGAAGGTAAGGATGCTTACGAGGTTGCGGTAGAACAAGGTTACGCGGGTACCAAGGCCGAATGGCTTGAATCTCTGGTAGGTGCTTCCGCTTATCAAGACGCCGTGGCTCAAGGCTACGACGGTACTCTGTCTGAGTGGTTGAATACCCTTAAAGGTCAATCGGCTTATCAAATCGCCGTGACCAATGGCTTCGTTGGAACCGAAGCACAATGGCTGGAATCCCTCAAAGGGCAGTCCGCTTATCAACTGGCTAAGGTCCTGGACCCAACAGTTGGTACTGAAGCCGAATGGTTGGCAACACTGGTTGGTAAGTCCGCTTATCAAGTAGCAGTTGATGCTGGTTTTAACGGCACTGAAGCTGCATGGTTGAAGTCCCTCGAAGGTAAGTCTGCATTCCAGATCTATCAATCTATTCCTGGGAACGAAAACAAAACTGAAGCCGAGTTCATCGCCAGCCTGAAAGGCGCTGATGGTGAAGAAGGTCCAGAAGGTAAGTCTGCTTTCCAAGTATGGCAAGCCCTACCCGGCAACGCCGATAAGACTGAAGACGATTACTTCGCCTTCCTGAAAGCTGACCTGACCCGTGAGAAACTGCAAGAACTGTTGGATCTTGGTCGCTATGTCACCAAGGATGCTTTCACCGTTGAAGGTGACGACAGTGGCGTGATCGCTAACGCAGGCTTCTTCAACTTCTTGTTCTTGTTCGACAAACGTATTGGTAATGAAGACAATTCGTCTCCAGCCAAAGTCCCACAACGCTCGGTTGAAATGGGTCGTATGGAAGCTGAAGGTTATTCCTACTGGAAGAACGATTCTGCTCCTACTAATGACCCAGCTGGTAAACTGCCTGCTGTACCCAATTCCGAAGTACGTCTCTATGATGACGGTCGCTTTGAGATCGGCAGTCTGACTGACTTCATTAGCTTTGGTGACGGTAGCAAAGTTACTGTAACTAACGACGAAGGTTCTACTGTTTATGACCTGGCTGAAGCTACGCAAGGTCACGACGGTAAGTCGGCATACGAAATCGCTGTTGAGAATGGCTTCGTAGGTACTGAAGCGCAATGGCTTGTATCACTGAAGGGTGAGCCCGGTACAGATGGTACCAACGGTACTAATGGCACAAACGGGACAGATGGTGAATCTGCATATGCGATTTGGGAAAACCAGCCAGGCAACGCCGGTAAGACGGAAGATGAGTTCTTACTCAGTCTGAAAGGCGCCGACGGTAAATCCGCGTATGACATCGCAGTAGAAGAAGGTTTCGTAGGTGACGAAGCTGCCTGGTTAGCCAGCCTTAAAGGTTCAAATGGCCAATCAGCCTTCCAACTGTGGCAGGCAGTTCCAGGTAATGAAGATAAGACTGAGAGTGAGTTCTTGGCTAGCTTGGTGGGCGCTGATGGTAAATCAGCTTATCAAGTATGGTTGGCACTTCCGGGCAATGCGGGTAAAACTGAAGCTGACTTTATTGCCAGCTTGAAAGGTACTCAAGGTGCCGCTGGTCTGTCGGCTTATCAAATCTGGCTGAACGCTGGTAACACTGGTACAGAAGCACAGTTCCTTGCTAGCCTGAAAGGCGCTGCGGGTACGAACGGCACCAATGGTACTAACGGTAAAGATGGCGCAGCTATTAATGTTGTGGCTACCATTACCCAAGCCGAGTTTGACCAAATCGTAGCGGATGGTGATGCCTTAATTGGTGACGCTTATTTCGTTGACGAGTTCATGTACGTCTACAACGGTACTGATTGGGTTAAATCACCTTCTCTGAAAGGCCCAACTGGTTCTGGTCTGAACTACCTCGGTGTTTGGCCAGATGCACAGCAGTTACCAACAGGTCCGACTTACAACGCCGGTGATACCTACATGTGGCGTTCTAACATGTGGACACTGATGTTGCAACCTACTCGCGCTTGGGTCGCTACTGGCGTACCTGGTCCACAGGGTAAGTCTGCATTCCAAGTGTGGCAAGAACTGCCAGGCAACGCTGGTAAAACTGAAGCCGAATTTATCGCTGCACTGAAAGGTGAACAGGGTATTGAAGGTCCAGATGGTCCGGAAGGTGAATCTGCTTTCCAAGTTTGGCAAGCGATCCCAGGAAACGAAGGTAAAACCCAAGCGCAGTTCTTCGAAGCACTGACTGGCGCCCCAGGTGAATCCGCATACGACATCTGGCTGGAACAACCAGGGAATGAAGGTAAGACTGAGGCCGAGTTCCTCGCTAGCCTGAAAGGCGCTGATGGCACCAACGGTACTAATGGTATCGACGGTGAGAACGCTGTAGCCTTTACCATTGAAGGTCAACTGGCTGACGTATCGGAATTACCTCGTCCAGGTAATGCCACCAAAGCCTACTACGTCGGTCAGAATCTTTACGTTTGGATCGACTCGAAGGACGACTATGAGAACCTCGGTTCTCTGAACGGTGCTTCGGCTTACCAGATCTGGTTGTCTCAACCGGGTAATTCTGGTACTGAAGAGGACTTCCTCAACTCCCTGAAAGGTAAGTCTGCTTACGCCTTGGCCGTAGAAGAAGGTTTCGTAGGTAGTGAGACCGCTTGGTTGGCTAGCCTGAAGGGTACCGACGGCACCAATGGTACTAACGGTACTGATGGTACGGACGGTCGCAACCTGCAAGTCAATGGGCAACAGGCTAATGAAGCGGCTATTAAGGCACTTCCATCTCCAGCTGACCAAGATGCTTGGGTCGCCGAAGACACTGGTAATCTGTGGATCTACAACGGTACCGAATGGATCGATGCTGGTCCTTTCCGTGGGGCTGCTGGTGAGAATGGTAAGTCTGCTTACGAACTGTGGGAAGAACAAGCTGGCAATGCTGGCAAGTCCGAAGCAGAGTTCTTAGCTAGCCTGAAAGGCGCTGATGGCACCAACGGTACTAATGGTACTGATGGCGTGGATGGCCAGTCAACCTACGAGCTGTGGCTTGAGCAACCAGGTAACGCTGGTAAGTCAGAAGCAGAGTTCCTTGAATCTATCAAGGGTGCCGCTGGTAAGGACGGGACTAATGGTACGAACGGTACCAATGGTCGTAACGTTGTTATCAAAGGTTCCGTAGACGATGAAGCCGCCCTCGGCACTATCGTCAACCCACAACAGCAAGATGCCTACACCACTCGTGATTTGGGTATCCTGTTCATGTACATTGGTACTACCTGGACTAACCTCGGTCAGTTCCGTGGTGACCAAGGTATTCAGGGTGAACAAGGCGTAGCTGGTCAAGGTTTGATCATCGTTGCTGAAGTTGAGTTGTTGACTGATCGTCCATCTCCAGCTACGCTAGAACCAGGTCAAGCTGTATTCGTACTCGAAGATCATCGCCTGTATCAGGTGAATGACGCTAACGTTTACGGTCCAGGTATCTTGATCCAAGGTCCACAAGGTGAAGAAGGTCCTGAGGGTAAACAAGGTGCGACTGGTACATCCATCAGCATCATGGGCTCTTACGCCAACGCAGCTGACCTGATCGCTGCACACCCTACTGGTAATCCCGGTGAAGGTTATCTGGTTGGTAACGACCTGTACCTCTACGGTGTGAACCCAACTGGTGGTGCTACAGAATGGTTTAACGCTGGTCAAGTTCGTGGCCCACAAGGTGAGCAAGGTGTTCCAGGTCCTCGTGGCTTGCGTGGTCTCATCGGTGAAACTGGTCAACGTGGTTCGCTGTGGTTGGTTCTTCCACCAGGCGTTGACACTCCTACTGCTGACTACGGTCGTCCAGGCGACTGGGCTGTCAACTCGCAGTTCGATTCGTTCTATCGCGATGAAGCAACTGGTTGGGGTCTCATCGGTCGTCTGGTTGCAGGTGACGTTAACTCGCCACTGCCAGGTCTGGGTAAAGTGGTCCGTGAAGGTAATCAGTGGGTTGCTCTGCCAATCGACGAAGTACCATCTCCAACAGTTGACGCTCAATACGTACGTAAGGGTGTTACTGGTGGTAAGACTGAGTGGGCTCTATTGTCCATCCCGTCTTCGGGTATTCCAGATGTACCAGCTAGCACCACTATCCCACAAGGTCGTACTTCGGCTGGCTGGACTGCGGTAATGGCTGCTCCAACTGGTCAAACCGCTGGTCGTCGCTACGAACTGTTGAACGGTGCATGGACTCAGTCGGCTGTTCAGGCTGCTGCTCCTTCTACTGTTGATACCGCACTGTGCTACTCTGTAACATCAGCTGGAGTCGGTTCGTGGGTTGGTGTAACATTCGATCGTTACTCGTTGAAACAGGATACAGCTGCCCGTCAAGGTGCATTCACTCCTGACTTCGCGGTACAACAGACCTTCCGTATTAACGGTGGGACTGGTTCGACTGCTACTGCTGTAACACTGCCAGCTGGCGCTACTGCACGTACGATGTTGGCCGTGTTTGTAGTCGAAGGTAATACTAACAAGTTGTCCTTCGTGGCTGGTACCGGTACCCCTACTCTGGGTTACAACAACGGTGTTGCTGCGGCAGATATCGAGTACGGCGCTACCCAGACTGTGATTACTGCATTCTGGAACGGCTTCGGTACTTGGATCATCTCCAAAGGTCCATCGTTCTAA

Genome Context

Tertiary structure

PDB ID

2bc514a87478291993d1cc344196db203b43ad4d6b955e2fc2db8991d5e80a16

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,5715

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence