Protein

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Genbank accession
YP_010090964.1 [GenBank]
Protein name
hinge connector of long tail fiber protein distal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MADLKASSTVGGAVIWHQGNFPLFPTGDSLLYKTYKVYSEKDKPQAVDNDFVSKANGGDYLKSVNYTEGLTLNDSAGYKVKFGKPISTDPNIIYTASLQIQSPFGLETAAGQPFIIFDPTTEPTTPRLTVMGKVIAGQLWDTNTRVYSPINPPKPVDVGLGNVTNDAQVKKAGDTMTGLLTAPNFISSNIASRSDHVPQYGQVIAKNTEIDFGTY
Physico‐chemical
properties
protein length:215 AA
molecular weight: 23188,79610 Da
isoelectric point:5,64652
aromaticity:0,09767
hydropathy:-0,29442

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010090964.1
1 215
Domain Start End Length (AA) Confidence
N-terminal 1 207 207 0,6314
Central domain 208 207 1 0,5740
C-terminal 208 215 7 0,4791
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-207
Central
208-207
C-terminal
208-215

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EcS1
[NCBI] 		2083276 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Kagamiyamavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010090964.1 [NCBI]
Genbank nucleotide accession
NC_055721 [NCBI]
CDS location
range 160565 -> 161212
strand +
CDS
ATGGCCGATTTAAAAGCTAGTTCTACAGTTGGAGGAGCCGTTATTTGGCACCAAGGAAACTTCCCGTTGTTCCCAACTGGTGACTCTCTTCTCTACAAAACATATAAAGTTTATTCTGAAAAGGATAAGCCGCAAGCAGTAGATAATGACTTTGTTTCAAAAGCAAACGGAGGCGATTATCTTAAAAGTGTTAACTACACTGAAGGTTTAACATTAAATGATTCTGCTGGGTATAAAGTTAAATTTGGCAAGCCTATTTCTACAGACCCAAATATAATCTATACAGCTTCACTTCAAATCCAATCTCCATTTGGGTTAGAAACCGCGGCTGGGCAGCCATTCATTATATTTGACCCAACAACTGAACCGACTACACCTCGTTTAACTGTAATGGGTAAAGTAATTGCTGGGCAATTGTGGGATACTAATACACGTGTATACTCACCTATAAACCCGCCAAAACCAGTTGATGTTGGATTAGGCAATGTAACTAATGATGCTCAAGTTAAAAAAGCTGGTGATACAATGACAGGTCTTTTAACTGCACCCAATTTTATTTCATCAAATATTGCATCTCGTTCTGATCATGTGCCTCAATATGGACAAGTAATTGCTAAAAACACTGAAATAGATTTTGGCACTTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f2f6eb2bf7cdc561edf0f48aff17dc7ff161c71b0edc125346b9612424a19372
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6902
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Full genome sequencing of a novel polyvalent bacteriophage as one of T4-Family member Kawasaki,T., Saad,A.M. and Yamada,T. 2018-07-28 — GenBank