Protein

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Genbank accession
XYY22187.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTKVTGSYESLIRGVSEQVAHQRYPGQHWVQDNMISDPVRGLVRRWGSVMKHEQATSALPTAATAQDVQDFRETSLYLGDVEYSFMHRRKQVIAGSTASGIVVVDKTNKRILPVSIGSTDTVAQSILQTGISSITSAGRFVLLASATKPVDYTEVNTWQTDRTGVCFVTVGNYSRTYSVTASHTNGLTYTASYTTPASYYPGTLDTSDIPNDANYVKAVNDRVYAYQTQVNQWIGTAAAAIVPSAIVVQLVLALRNAGFPAGDVNSIENHMVFGNVLTGLSITDGANNSTVGAVFQEVEAVTDLSVRHRADKVIRISPKITSGGSGTSYYVKARQISASDTSGWPKVIWEEAAGIKVTPGFVCMLGCIQGGTFYLASSAAILQSISGVSAPEWVPSSSGDYDSQQQLAMFGKTINYMRLFQDRLMVIAGSTVLLSKTGDYFNFFRASALQIANDDPIEMYALGSDDDVITDGALLDRDLLLFGNVWQYVISGREALSPQSPYISIQSSYTDSNHCSPVSAGNLVFYTQPRDHKLTVQQMQTGAYAGTVATFEVTQQLSKYLQGSPTALVATTSPSAVFVRTTGLTNGVYVFSYLDAPGQTERLFDSWSRWTWNESLGPTVGITGKDGALLTVTLRSGIGSNLYVLDEFTLAGTLSDTPYLDSQRPGQAPGGMAVGTPIAASLSAAMNGDAGDFFLIGRPFSDIALLEAEFPTLIGSIVIGANYDSLVTVTNPYMRDNDGKPILDGRLTVGNFNVTTVDSAAMKVEVQDLQTLGMETTEVLNWVARPAGSWVLNKQQVMETATMAAGVYKETRNCKVTFRSRSWLPFGLSTMEWTGQFFTRRT
Physico‐chemical
properties
protein length:842 AA
molecular weight: 91009,32830 Da
isoelectric point:5,31077
aromaticity:0,09382
hydropathy:-0,05392

Domains

Domains [InterPro]
IPR058003
TTP
1–614
IPR058003 IPR058003
DC_0058
STR
1–842
DC_0058
XYY22187.1
1 842
Architecture
STR
STR 1-842
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22187.1
1 842
Domain Start End Length (AA) Confidence
N-terminal 1 195 195 0,8842
Central domain 196 394 200 0,1602
C-terminal 395 842 447 0,2337
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-195
Central
196-394
C-terminal
395-842

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaD1
[NCBI] 		3446272 Viruses > unclassified bacterial viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22187.1 [NCBI]
Genbank nucleotide accession
PV763891 [NCBI]
CDS location
range 5467 -> 7995
strand +
CDS
ATGACCAAAGTTACGGGCAGCTATGAGTCCTTGATCCGTGGCGTGTCCGAACAGGTCGCGCATCAGCGGTATCCCGGCCAACACTGGGTGCAGGACAATATGATTTCGGACCCGGTGCGCGGCCTTGTGCGGCGCTGGGGTTCGGTCATGAAACACGAGCAGGCTACGTCAGCGCTGCCTACCGCTGCAACGGCGCAGGATGTTCAGGACTTCCGCGAGACCTCGCTGTACCTCGGCGACGTTGAGTACAGCTTCATGCACCGCCGCAAGCAGGTGATCGCAGGCAGCACCGCCAGCGGCATCGTCGTGGTGGACAAGACCAACAAGCGCATCTTGCCAGTCAGCATTGGCAGCACTGACACCGTGGCGCAGAGCATTCTGCAAACGGGCATCAGCAGCATCACGAGTGCTGGACGGTTCGTGCTGCTGGCGTCGGCGACCAAGCCAGTGGACTACACCGAGGTCAACACTTGGCAGACGGATCGAACGGGCGTATGCTTCGTCACGGTTGGCAACTACTCCCGGACGTACAGCGTCACGGCGAGCCACACCAACGGGCTGACGTACACAGCCTCGTACACAACTCCGGCGAGTTACTACCCCGGAACGCTGGACACGAGCGACATCCCCAACGACGCCAACTACGTCAAGGCGGTGAACGACCGCGTGTATGCGTACCAGACACAGGTTAACCAGTGGATCGGTACGGCAGCAGCAGCAATCGTGCCATCTGCCATCGTAGTGCAGCTTGTGCTGGCGCTGCGCAACGCAGGCTTCCCAGCAGGCGATGTGAACAGCATCGAGAACCATATGGTGTTCGGAAACGTACTGACTGGACTGAGCATCACAGACGGTGCGAACAACAGCACAGTGGGCGCGGTGTTTCAGGAGGTCGAAGCAGTTACGGACCTCAGCGTAAGGCACAGGGCCGACAAGGTTATCCGAATCAGTCCCAAGATCACGAGCGGCGGCAGTGGCACTTCGTACTACGTCAAGGCTCGCCAGATCAGCGCGTCGGACACCAGCGGGTGGCCCAAGGTCATTTGGGAGGAAGCAGCAGGCATCAAGGTGACGCCGGGCTTCGTGTGCATGCTGGGATGCATTCAGGGCGGCACGTTCTACCTCGCTAGCAGCGCAGCTATCCTGCAAAGCATCAGCGGAGTGAGCGCACCGGAGTGGGTTCCGAGTTCGTCCGGTGACTACGACAGCCAGCAACAACTGGCGATGTTCGGCAAGACGATCAACTACATGCGGCTGTTCCAAGATCGCCTGATGGTAATCGCAGGCTCCACGGTTCTGCTGTCCAAGACAGGTGACTACTTCAACTTCTTCCGGGCATCCGCGTTGCAGATTGCGAACGACGACCCGATTGAAATGTACGCACTGGGTTCTGACGACGACGTTATCACTGACGGCGCGTTGCTTGACCGGGACTTGCTCCTGTTCGGGAACGTGTGGCAGTACGTCATCAGTGGCCGGGAAGCGCTGTCACCGCAGTCGCCGTACATCAGCATTCAGTCCAGCTACACGGACAGTAACCACTGCTCTCCGGTGAGCGCGGGTAACTTGGTGTTCTACACTCAGCCCCGAGACCACAAGCTGACAGTGCAGCAGATGCAGACCGGCGCGTACGCTGGCACCGTTGCGACCTTCGAGGTGACGCAGCAGCTCAGCAAGTACCTGCAAGGCAGCCCGACTGCGCTGGTGGCAACGACCTCTCCATCGGCGGTGTTCGTCCGCACGACTGGGCTCACCAACGGCGTGTACGTGTTCAGCTACTTGGACGCACCGGGCCAAACGGAACGGCTGTTCGATAGCTGGAGCCGGTGGACTTGGAACGAATCGCTCGGCCCAACTGTCGGGATCACCGGCAAGGACGGCGCGTTGCTGACAGTGACCCTGCGCAGCGGCATCGGTTCCAACCTGTACGTGCTGGACGAGTTCACGCTTGCGGGTACGTTGAGCGACACGCCGTATCTGGACAGCCAGCGTCCCGGACAGGCGCCGGGCGGGATGGCCGTGGGCACACCAATTGCTGCCAGCCTGAGCGCTGCAATGAACGGTGACGCGGGAGACTTCTTCCTGATCGGTCGCCCGTTCTCCGACATCGCTTTGCTGGAGGCAGAGTTCCCGACCCTTATCGGTTCCATCGTGATCGGCGCGAACTACGACAGCCTCGTCACCGTCACCAACCCGTACATGCGGGACAACGACGGCAAGCCGATTCTTGACGGACGGTTGACTGTGGGCAACTTCAACGTGACCACTGTTGACAGCGCGGCCATGAAGGTTGAGGTGCAGGACTTGCAGACGCTGGGCATGGAAACCACCGAGGTTCTTAACTGGGTGGCTCGGCCAGCAGGCTCGTGGGTACTCAACAAGCAGCAGGTCATGGAGACTGCAACGATGGCTGCGGGCGTGTACAAAGAGACACGTAACTGTAAGGTAACGTTCCGCTCTCGCTCGTGGCTTCCATTTGGATTGTCCACCATGGAATGGACTGGACAGTTCTTCACTCGGAGGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b7c778768c16e7d0c0be69ee8832bc167c8fb98f4321d5bc34ab0e6c421683e0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8876
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. 2025 40812186 GenBank