Protein

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Genbank accession
YP_009274369.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPLKSTWQPGESYTAADANDVANAVNSNTTAIAARVPTSRIISTGSGLTGGGDLATDRALEIDFGTGAGKVCQGDDPRLSDARPPTAHTHNASDITGLVGGDKEWSGTKSGTGTLTLTSSDMRKAWLIEGYSTVYLPAGASADWVILGATPHPTYSEYGPQLYPPSGVLHNYAVGTVTAIRIPEASRFGVLVKYIGSGWTYSGAAVSGSDIGVGSVVEGHLVTGAVTTGKIADYAVTASKLAPVLSRTVESIATYPSPGAAIASGNHQMNVTALATNATFVAPTGTLYDGGTLLYRVKDNGTARTLSYNAVFRPIGVTLPTTTTPNKTLYIGARWNAADSKWDVLAVGAES
Physico‐chemical
properties
protein length:351 AA
molecular weight: 36130,85490 Da
isoelectric point:6,06224
aromaticity:0,07407
hydropathy:-0,05613

Domains

Domains [InterPro]
DC_0230
STR
2–351
DC_0230
YP_009274369.1
1 351
Architecture
STR
STR 2-351
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009274369.1
1 351
Domain Start End Length (AA) Confidence
N-terminal 1 125 125 0,6665
Central domain 126 324 200 0,1678
C-terminal 325 351 26 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-125
Central
126-324
C-terminal
325-351

Taxonomy

  Name Taxonomy ID Lineage
Phage Tsukamurella phage TPA4
[NCBI] 		1647476 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Tsukamurella paurometabola
[NCBI] 		2061 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009274369.1 [NCBI]
Genbank nucleotide accession
NC_030916 [NCBI]
CDS location
range 25836 -> 26891
strand +
CDS
ATGCCGCTCAAGAGCACCTGGCAGCCGGGGGAGAGCTACACCGCCGCCGACGCGAACGACGTCGCGAACGCTGTCAACAGCAACACCACGGCGATCGCGGCGAGGGTGCCCACGTCGCGCATCATCAGCACCGGAAGCGGCTTGACCGGCGGTGGGGACCTCGCGACCGACCGCGCCCTCGAGATCGACTTCGGAACGGGCGCCGGGAAGGTCTGCCAGGGCGACGACCCGCGGCTGTCCGACGCTCGCCCGCCGACCGCGCACACCCACAACGCGTCGGACATCACCGGTCTGGTCGGCGGCGACAAGGAGTGGTCGGGCACGAAGTCCGGGACGGGGACGTTGACCCTGACGTCCTCGGACATGCGGAAGGCGTGGCTGATCGAGGGGTACTCCACGGTGTACCTGCCCGCCGGGGCCAGCGCGGACTGGGTGATCCTCGGGGCGACACCGCATCCCACGTACTCCGAGTACGGGCCGCAGCTGTACCCCCCGTCCGGGGTGCTGCACAACTACGCGGTCGGAACCGTCACGGCAATCCGAATCCCTGAGGCGTCGCGGTTCGGTGTCCTGGTCAAGTACATCGGTTCCGGGTGGACCTACTCCGGGGCGGCGGTGTCCGGCAGCGACATCGGAGTGGGGTCGGTCGTGGAAGGGCACCTGGTGACGGGTGCCGTGACCACGGGCAAGATCGCCGACTACGCGGTCACGGCGTCGAAGCTGGCCCCGGTCCTGTCTCGCACGGTGGAGAGCATCGCCACGTACCCGTCGCCGGGCGCGGCGATCGCGTCGGGCAATCACCAGATGAACGTGACGGCTCTCGCGACGAACGCGACGTTCGTGGCCCCGACCGGCACCCTGTACGACGGTGGAACGCTGTTGTATCGGGTGAAGGACAACGGGACGGCGCGCACGTTGTCGTACAACGCGGTGTTCCGGCCGATCGGGGTTACGTTGCCGACGACCACGACGCCGAACAAGACGTTGTACATCGGTGCGCGGTGGAACGCGGCCGACAGCAAGTGGGATGTCCTCGCCGTCGGAGCCGAGAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b5ec82009a4ae7412e0a00d43e32751042008acfb5678f60e4250fc28d9aabfa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7421
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Locating and activating molecular 'time bombs': can Mycolata prophages be selectively induced en masse to biologically control activated sludge foaming? Dyson,Z.A., Brown,T.L., Farrar,B., Doyle,S., Tucci,J., Seviour,R.J. and Petrovski,S. 2016-08-03 — GenBank