Protein

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Genbank accession
AVO23842.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAITLPTLPSLPTLPTQLPSASLTPAAVLNVVSLIAKNLPKINPPTPLYAIINADTGLPLTIPDSWGEMTLHFAEYQTTDYPIEAGGFMSANKVRRPDGVEVTLIKTGTDLARATWLEAIRVQIAADPIARYHILTPSGIYQSQTITRLSHQTRPDRGTNLLYLDLQLTEVPQITTPSLQGDNAVEPEAGPTQEVGRVYPSDASPQVASLAIAGASTGSPLLGA
Physico‐chemical
properties
protein length:224 AA
molecular weight: 23795,85930 Da
isoelectric point:4,95803
aromaticity:0,04911
hydropathy:-0,00045

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage XPP3
[NCBI] 		2099855 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVO23842.1 [NCBI]
Genbank nucleotide accession
MG944229.1 [NCBI]
CDS location
range 34533 -> 35207
strand +
CDS
ATGGCGATCACGCTACCGACGCTCCCGAGCCTACCGACCCTGCCGACGCAGCTGCCGTCGGCGTCGCTGACCCCGGCGGCGGTCCTCAACGTCGTATCGCTGATCGCAAAAAATTTGCCGAAAATCAATCCACCGACCCCGCTCTATGCGATCATCAACGCCGACACCGGTCTGCCGCTCACGATCCCCGATAGTTGGGGCGAGATGACGCTGCATTTTGCCGAGTACCAGACGACCGACTACCCCATCGAGGCTGGCGGGTTTATGTCGGCCAACAAGGTGCGTCGCCCGGACGGCGTCGAAGTAACGCTGATCAAGACCGGTACGGACCTTGCGCGCGCCACGTGGTTGGAGGCGATCCGCGTACAGATCGCCGCCGATCCGATTGCGCGCTATCACATCCTCACCCCGTCGGGCATTTACCAGTCGCAGACGATCACGCGGCTGTCGCACCAAACCCGCCCGGATCGCGGCACGAATCTGTTGTACCTCGATCTGCAATTGACGGAGGTGCCGCAGATCACGACGCCGTCGCTGCAAGGCGACAACGCCGTCGAACCGGAGGCCGGGCCGACGCAGGAGGTCGGGCGCGTCTATCCGTCCGATGCCTCTCCCCAAGTGGCGTCGCTCGCTATCGCCGGAGCGTCGACCGGCAGTCCTCTTCTCGGAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63a0a60b899a08ecb5401fbc58d22309ee47be9ae7c323fe9aa12a5e17d6f36a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7747
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and comparative genomics of Xanthomonas oryzae pv. oryzae bacteriophages Varga,I., Molnar,J., Gazdag,A., Szucs,D., Doffkay,Z., Valappil,S.K., Papp,S., Pinter,R., Vera Cruz,C.M., Ricardo,O., Vizi,T., Schneider,G., Rakhely,G. and Kovacs,T. 2019-07-03 — GenBank