Protein

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Genbank accession
YP_003084218.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MASSKISELTQITNTTADDLLLVSHTSDSGSTYNSRHISRANLQDDLTITHGQVSDFDTGVQENTLDSLAAPTSDVDINSQKLTNLSDPANPQDAATKAYVDAAANGLDVKDSVRVATTTDITLSGTQTIDGVAVIAGDRVLVKDQATGSENGIYVVAAGAWSRSEDADNTPSGEVTSGMFTFIEEGTTNASAGFILQTANPITLGSTSLSFAQFSGAGQITAGTGLAKSGNTLSVHPDVMADIADVISLSGVAGNATDLGSFTGSTIDAGSTIKEALQDVVNAVELAATDARVDEIDQNVDDLISLTGVVENTTTLGTFTGGTIADSSTIKGALQALETLVEAEALEVDELTLNQDDLVTLSGVAENATHLGTFTGGTIVDNSTVKVALQALETAAEGSVQTGDNLTELVGSTSADSEPASYLFVVVDANDGSIKVIDKTFIEVE
Physico‐chemical
properties
protein length:446 AA
molecular weight: 45668,24880 Da
isoelectric point:4,05003
aromaticity:0,03587
hydropathy:-0,00112

Domains

Domains [InterPro]
DC_1609
STR
3–444
DC_1609
Coil
Unmapped
335–355
Coil
YP_003084218.1
1 446
Architecture
STR
STR 3-444 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003084218.1
1 446
Domain Start End Length (AA) Confidence
N-terminal 1 405 405 0,9898
Central domain 406 435 31 0,0252
C-terminal 436 446 10 0,9905
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-405
Central
406-435
C-terminal
436-446

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage PSS2
[NCBI] 		658401 No lineage information
Host Prochlorococcus marinus str. MIT 9313
[NCBI] 		74547 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003084218.1 [NCBI]
Genbank nucleotide accession
NC_013021 [NCBI]
CDS location
range 51512 -> 52852
strand +
CDS
ATGGCATCTTCTAAGATCTCTGAGTTAACTCAGATAACCAATACAACGGCAGATGATCTTCTGCTGGTTTCACACACTTCTGATAGTGGCTCTACCTACAACAGCCGCCACATTAGCCGTGCGAATCTTCAAGACGACCTGACTATCACCCACGGTCAAGTCTCTGATTTCGACACTGGCGTTCAAGAGAATACTCTTGATAGCCTTGCTGCTCCTACTTCTGATGTTGACATCAACAGTCAGAAGCTGACCAACCTGTCTGATCCAGCGAATCCACAAGACGCTGCGACAAAGGCTTATGTGGACGCAGCCGCGAATGGCCTTGACGTCAAGGACTCCGTCCGCGTTGCTACTACAACAGACATCACTCTCAGCGGTACTCAGACCATTGACGGCGTTGCCGTTATTGCTGGCGACCGCGTCTTAGTTAAGGATCAGGCCACTGGTTCCGAGAACGGCATCTACGTCGTTGCTGCCGGTGCATGGTCACGCTCAGAAGACGCTGACAACACCCCTAGTGGTGAGGTCACTTCGGGCATGTTTACCTTCATCGAAGAAGGTACTACAAATGCATCTGCTGGCTTCATCCTGCAGACCGCCAACCCCATCACCCTTGGCTCAACAAGCCTGAGCTTTGCCCAGTTTTCTGGTGCTGGTCAGATCACCGCTGGAACAGGCCTAGCCAAGTCTGGTAACACCCTGAGTGTTCACCCTGACGTGATGGCTGACATCGCCGATGTCATCTCTCTGAGTGGTGTTGCAGGTAACGCAACCGACCTAGGCAGCTTCACTGGCAGCACTATTGACGCTGGCAGCACCATTAAGGAAGCTCTTCAGGATGTTGTCAACGCTGTCGAGCTTGCTGCTACTGACGCTCGTGTTGACGAGATCGACCAAAACGTTGACGACCTGATCTCCCTCACGGGTGTCGTCGAGAACACAACTACTCTCGGCACCTTTACCGGCGGAACTATCGCCGACAGCTCCACGATCAAGGGCGCCCTTCAGGCTCTTGAGACCTTAGTTGAGGCTGAAGCTCTTGAGGTCGATGAACTGACCCTCAATCAGGATGACCTGGTCACCCTGTCCGGCGTTGCTGAAAACGCTACACACCTTGGAACCTTTACCGGCGGAACCATCGTCGACAACAGCACCGTCAAAGTTGCTCTGCAAGCTCTTGAGACTGCTGCTGAGGGATCTGTTCAGACCGGCGACAACCTCACCGAGCTCGTGGGCAGCACTTCCGCTGACTCTGAGCCTGCCTCTTATCTGTTCGTTGTTGTCGACGCTAACGACGGCAGCATCAAGGTCATTGATAAGACCTTCATTGAGGTGGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8b72c066d10d8f6a8f0dedff9fd37b115ba8783c8dadfa7763de103aafa3b00e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7236
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50