Protein

View in Explore
Genbank accession
YP_009302120.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,74
Protein sequence
MSQLRVNSIKGLNVPASGPQIDIGNTGDISLNNANLTNVNDATVTTANVTTNNVTTENVTTLNVTNNMDLRNANQFVVPVGTDAERPSSPNVGTIRYNSTSGKPEFWTGTAWKNFTIQRFTEEITSGSSWSVPSGVSSVEVMVVAGGGSGGSGTGGAGGAGGVVYSSALPVTPGGTVSYSVGNGGPGGYQGRGNNGQNSTFGTITANGGGGGGTTYPPSRRGGRPGGSGGGGAQYPSGRYGGGDRTQPATPVAGAVGYGNNGERGRGGGGGAGGAGSGNTGGPGVTISVGENQYTVGGGGRGQSNGPTPGGGVPGGGGGNSGSRGGAGGARQGGGGGAGWDYGGGRSGAGGSGFIVVSYLN
Physico‐chemical
properties
protein length:361 AA
molecular weight: 34462,47330 Da
isoelectric point:9,59233
aromaticity:0,05817
hydropathy:-0,45429

Domains

Domains [InterPro]
DC_0654
STR
2–294
DC_0654
IPR049304
STR
127–359
IPR049304
YP_009302120.1
1 361
Architecture
STR
STR 2-359 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM50
[NCBI] 		687803 Uroviricota > Caudoviricetes > Pantevenvirales > Neptunevirus > Neptunevirus srim50
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009302120.1 [NCBI]
Genbank nucleotide accession
NC_031242 [NCBI]
CDS location
range 29818 -> 30903
strand +
CDS
ATGTCACAACTTAGAGTTAATTCTATTAAAGGATTGAATGTTCCCGCCTCGGGTCCACAAATTGATATTGGTAATACTGGTGACATTAGTCTCAATAATGCCAACCTTACTAATGTTAATGATGCAACCGTTACTACGGCAAATGTTACAACGAACAATGTAACTACAGAGAACGTTACTACTCTGAATGTTACTAATAATATGGATTTGCGTAATGCAAACCAGTTTGTTGTTCCAGTAGGAACAGACGCCGAACGTCCTAGTTCTCCTAATGTAGGTACTATTCGTTATAATAGTACCAGTGGTAAACCTGAATTCTGGACTGGTACTGCATGGAAGAATTTTACTATTCAAAGATTTACTGAAGAAATTACATCTGGTTCTTCTTGGAGTGTACCTTCTGGTGTAAGTTCTGTTGAAGTAATGGTTGTTGCTGGTGGTGGTTCTGGTGGTTCTGGAACTGGTGGCGCTGGTGGCGCTGGTGGTGTTGTTTATTCTTCTGCTTTACCTGTAACTCCTGGTGGCACTGTTTCATATAGTGTTGGTAATGGTGGTCCTGGTGGATATCAAGGAAGAGGAAATAACGGACAAAATTCTACATTTGGTACTATTACTGCTAATGGTGGCGGTGGTGGTGGAACCACTTATCCTCCCTCTCGTCGTGGTGGTCGCCCAGGCGGTTCTGGCGGTGGTGGAGCACAATACCCCTCTGGTAGATACGGCGGTGGAGATAGAACACAACCCGCAACTCCTGTTGCTGGAGCTGTTGGATATGGAAATAATGGTGAGCGTGGCAGAGGCGGCGGTGGCGGTGCTGGTGGTGCTGGTAGTGGCAACACTGGCGGTCCTGGTGTAACTATTAGTGTAGGGGAAAACCAATATACTGTTGGCGGCGGCGGTCGTGGTCAATCGAATGGACCTACTCCTGGCGGGGGTGTTCCTGGCGGTGGTGGTGGCAACAGTGGTTCTCGGGGAGGTGCGGGCGGCGCACGTCAAGGTGGCGGCGGCGGCGCTGGATGGGATTACGGTGGTGGTCGTTCTGGCGCTGGTGGTTCTGGTTTTATTGTTGTTTCTTACTTAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aeba1dc1d738ad177bfd32aaa49b2d90b12c51605944bc9d1a4b90f954d4e3af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7729
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genomic content and context of auxiliary metabolic genes in marine cyanophages Marston,M.F., Martiny,J.B.H. and Crummett,L.T. 2016-12 — GenBank